LXL04_022924 | RubberDandelionOmics

Gene overview

LXL04_022924

Reference: OH-1004 Chr: Chr05 Coordinates: 13713397-13714228 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

459 bp · LXL04_022924|LXL04_022924|OH1004|cDNA

ATGGCGGATGTGGAGGTTGATGTCGCGGCCGCTGGAGTGCCGAAGAAGAGAACGTTCAAGAAGTTCAGTTTCAGAGGAGTCGATTTGGATGCTTTGCTTGATATGTCCACTGACGAGCTCGTAAAGCTTTTCACTGCTCGCGCTCGCAGAAGGTTTAACAGAGGGTTGAAGAGGAAGCCCATGGCTTTGATTAAGAAGTTGCGCAAAGCCAAACGTGAGGCACCTGCTGGAGAGAAGCCGGAGCTCGTGAAGACTCATTT...

CDS

Download CDS FASTA

459 bp · LXL04_022924|LXL04_022924|OH1004|CDS

ATGGCGGATGTGGAGGTTGATGTCGCGGCCGCTGGAGTGCCGAAGAAGAGAACGTTCAAGAAGTTCAGTTTCAGAGGAGTCGATTTGGATGCTTTGCTTGATATGTCCACTGACGAGCTCGTAAAGCTTTTCACTGCTCGCGCTCGCAGAAGGTTTAACAGAGGGTTGAAGAGGAAGCCCATGGCTTTGATTAAGAAGTTGCGCAAAGCCAAACGTGAGGCACCTGCTGGAGAGAAGCCGGAGCTCGTGAAGACTCATTT...

Protein

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152 aa · LXL04_022924|LXL04_022924|OH1004|PROTEIN

MADVEVDVAAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFNRGLKRKPMALIKKLRKAKREAPAGEKPELVKTHLRNMIIVPEMIGSVVGVYNGKTFNQIEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_022924`
TK1151 ID	TkA06G427570
OH-1004 ID	LXL04_022924
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_022924

Location Chr05:13713397-13714228 (-)

Description Similar to RPS15: 40S ribosomal protein S15

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g09500`	Small ribosomal subunit protein uS19y.	No verified direct reference in this release
`At5g09510`	Small ribosomal subunit protein uS19x.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0184300`	Small ribosomal subunit protein uS19.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022924 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000028 ribosomal small subunit assembly Biological Process

GO:0006412 translation Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0022626 cytosolic ribosome Cellular Component

GO:0022627 cytosolic small ribosomal subunit Cellular Component

GO:0003723 RNA binding Molecular Function

GO:0003729 mRNA binding Molecular Function

KEGG gene cross-reference

ath:AT5G09500

ath:AT5G09510

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.833

Rank 1 · LXL04_022924 · OH-1004

Nucleus0.241

Rank 2 · LXL04_022924 · OH-1004

Endoplasmic reticulum0.139

Rank 3 · LXL04_022924 · OH-1004

Cell membrane0.036

Rank 4 · LXL04_022924 · OH-1004

Mitochondrion0.035

Rank 5 · LXL04_022924 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00203.27Ribosomal_S1950-135 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_022924	`PF00203.27`	Ribosomal_S19	50	135	9.9e-34	115.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FY65`	Arabidopsis thaliana	Small ribosomal subunit protein uS19y	87.500%	Swiss-Prot	strong database homology
`Q9FY64`	Arabidopsis thaliana	Small ribosomal subunit protein uS19x	89.474%	Swiss-Prot	strong database homology
`P31674`	Oryza sativa subsp. japonica	Small ribosomal subunit protein uS19	87.662%	Swiss-Prot	strong database homology

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