LXL04_022829 | RubberDandelionOmics

Gene overview

LXL04_022829

Reference: OH-1004 Chr: Chr05 Coordinates: 10354467-10354889 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

423 bp · LXL04_022829|LXL04_022829|OH1004|cDNA

ATGAGGTCTTCTACACCGTATAATTTATTCATCTTTGTCATCTCAACATTCTCAATTGCTTCGGTAGCTTTTTCATGTGGGTTGACCACAAAATGGAATGTTTCAGTTATTAGTGCTATCGGTGAAGATATTGTTGCCCATATCAAATCCGGAGATGACGATCTTGGAAATCATACTATTCCATATGTTGGAATCTACAGTTGGTCTTTTTGTGAAAACTTTGGTGGTGGCACAGTTTTTTACGGCTACTTCTGGTGGGG...

CDS

Download CDS FASTA

423 bp · LXL04_022829|LXL04_022829|OH1004|CDS

ATGAGGTCTTCTACACCGTATAATTTATTCATCTTTGTCATCTCAACATTCTCAATTGCTTCGGTAGCTTTTTCATGTGGGTTGACCACAAAATGGAATGTTTCAGTTATTAGTGCTATCGGTGAAGATATTGTTGCCCATATCAAATCCGGAGATGACGATCTTGGAAATCATACTATTCCATATGTTGGAATCTACAGTTGGTCTTTTTGTGAAAACTTTGGTGGTGGCACAGTTTTTTACGGCTACTTCTGGTGGGG...

Protein

Download Protein FASTA

140 aa · LXL04_022829|LXL04_022829|OH1004|PROTEIN

MRSSTPYNLFIFVISTFSIASVAFSCGLTTKWNVSVISAIGEDIVAHIKSGDDDLGNHTIPYVGIYSWSFCENFGGGTVFYGYFWWGSKFQSLALIDNNIERRCYFDNVATQRCYWFVKPDGFYVSRYPNGGGELIKHWD

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_022829`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_022829

Location Chr05:10354467-10354889 (-)

Description Similar to SPH5: S-protein homolog 5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g04645`	S-protein homolog 5.	No verified direct reference in this release
`At4g16295`	S-protein homolog 1.	No verified direct reference in this release
`At4g29035`	S-protein homolog 74.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_022829 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009875 pollen-pistil interaction Biological Process

GO:0060320 rejection of self pollen Biological Process

GO:0005576 extracellular region Cellular Component

KEGG gene cross-reference

ath:AT1G04645

ath:AT4G16295

ath:AT4G29035

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.421

Rank 1 · LXL04_022829 · OH-1004

Lysosome / Vacuole0.237

Rank 2 · LXL04_022829 · OH-1004

Cytoplasm0.144

Rank 3 · LXL04_022829 · OH-1004

Cell membrane0.140

Rank 4 · LXL04_022829 · OH-1004

Endoplasmic reticulum0.137

Rank 5 · LXL04_022829 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05938.18Self-incomp_S142-139 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_022829	`PF05938.18`	Self-incomp_S1	42	139	2e-14	54.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O23020`	Arabidopsis thaliana	S-protein homolog 5	32.000%	Swiss-Prot	moderate database homology
`F4JLS0`	Arabidopsis thaliana	S-protein homolog 1	26.549%	Swiss-Prot	weak database homology
`Q2HQ46`	Arabidopsis thaliana	S-protein homolog 74	26.271%	Swiss-Prot	weak database homology

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