LXL04_022681 | RubberDandelionOmics

Gene overview

LXL04_022681

Reference: OH-1004 Chr: Chr05 Coordinates: 4734633-4737950 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1401 bp · LXL04_022681|LXL04_022681|OH1004|cDNA

ATGAATGTGATGCGTCGTCTGAAGAGTATCGCTTCTGGTCGTTCGTCCGTTTCAGATCCTGGTGGAGATTCCAGCATTAAAAGAGTAAAAGTCGAGCAAGAAGTAGAATCACATGTTATTGATGAACCACAATCAGTAGAAAAGACTACCACGAGTGTAGAACAGCAGCCCATGGATGCTACTGCCGAAATGTCTGCAAGTACATCCAACACATCTTCTATTCCAAAACCTGAAAAATCCGACTATGACGAGCTTCCAAA...

CDS

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1401 bp · LXL04_022681|LXL04_022681|OH1004|CDS

ATGAATGTGATGCGTCGTCTGAAGAGTATCGCTTCTGGTCGTTCGTCCGTTTCAGATCCTGGTGGAGATTCCAGCATTAAAAGAGTAAAAGTCGAGCAAGAAGTAGAATCACATGTTATTGATGAACCACAATCAGTAGAAAAGACTACCACGAGTGTAGAACAGCAGCCCATGGATGCTACTGCCGAAATGTCTGCAAGTACATCCAACACATCTTCTATTCCAAAACCTGAAAAATCCGACTATGACGAGCTTCCAAA...

Protein

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466 aa · LXL04_022681|LXL04_022681|OH1004|PROTEIN

MNVMRRLKSIASGRSSVSDPGGDSSIKRVKVEQEVESHVIDEPQSVEKTTTSVEQQPMDATAEMSASTSNTSSIPKPEKSDYDELPKEMHEMKIKEDKSEDKEIEATVVNGNGPEKGQVIVTTVGGRNGQPKQTLSYMAERVVGTGSFGVVFEAKCLETGESVAIKKVLQDKRYKNRELQIMRLLDHPNVVPLKNCFYSTTEKNEVYLNVVLEYVPETVYRVSRHYSRMTHQIPLIYVQLYTYQICRALNYIHSVIGVCH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_022681`
TK1151 ID	TkA06G466180
OH-1004 ID	LXL04_022681
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_022681

Location Chr05:4734633-4737950 (-)

Description Similar to ASK8: Shaggy-related protein kinase theta

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g00720`	May mediate extracellular signals to regulate transcription in differentiating cells.	No verified direct reference in this release
`At5g14640`	May mediate extracellular signals to regulate transcription in differentiating cells.	No verified direct reference in this release
`At5g26751`	May mediate extracellular signals to regulate transcription in differentiating cells.	No verified direct reference in this release
`At3g05840`	May mediate extracellular signals to regulate transcription in differentiating cells.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_022681 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006972 hyperosmotic response Biological Process

GO:0007165 signal transduction Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009741 response to brassinosteroid Biological Process

GO:0009933 meristem structural organization Biological Process

GO:0016310 phosphorylation Biological Process

GO:0030154 cell differentiation Biological Process

GO:0042538 hyperosmotic salinity response Biological Process

GO:0046777 protein autophosphorylation Biological Process

GO:1901002 positive regulation of response to salt stress Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT3G05840

ath:AT4G00720

ath:AT5G14640

ath:AT5G26751

bna:106388722

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.752

Rank 1 · LXL04_022681 · OH-1004

Cytoplasm0.375

Rank 2 · LXL04_022681 · OH-1004

Cell membrane0.039

Rank 3 · LXL04_022681 · OH-1004

Mitochondrion0.035

Rank 4 · LXL04_022681 · OH-1004

Endoplasmic reticulum0.019

Rank 5 · LXL04_022681 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase138-421 aa

PF07714.24PK_Tyr_Ser-Thr140-335 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_022681	`PF00069.32`	Pkinase	138	421	1.3e-61	209.0
LXL04_022681	`PF07714.24`	PK_Tyr_Ser-Thr	140	335	1.1e-23	84.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q96287`	Arabidopsis thaliana	Shaggy-related protein kinase theta	74.627%	Swiss-Prot	strong database homology
`Q8VZD5`	Arabidopsis thaliana	Shaggy-related protein kinase epsilon	79.688%	Swiss-Prot	strong database homology
`P43288`	Arabidopsis thaliana	Shaggy-related protein kinase alpha	77.975%	Swiss-Prot	strong database homology
`P43289`	Arabidopsis thaliana	Shaggy-related protein kinase gamma	74.817%	Swiss-Prot	strong database homology

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