Gene Card
Gene overview
cDNA / CDS / Protein Sequences
408 bp · LXL04_022586|LXL04_022586|OH1004|cDNA
ATGCGCAATTTACTGTTCCCTTTACCTGTTCTTACGAAAAAGGTGGAGACTATGGGTGGCCATGATGATTCAAGCGTATCTGAAAAGAAATCAATTGACAACGAATTACCAACTTTCAATATCGAGAATATGCAAAGCAACATGAAGGTGATATACTACAGTCGAACATTCATGTCCATCATTGGTGGAGTGATTGCTGGAATATTGGGATTCACAGGGCTGATGGGGTTTGTGTTTTATATACTTGTCATGGGTATTAC...
408 bp · LXL04_022586|LXL04_022586|OH1004|CDS
ATGCGCAATTTACTGTTCCCTTTACCTGTTCTTACGAAAAAGGTGGAGACTATGGGTGGCCATGATGATTCAAGCGTATCTGAAAAGAAATCAATTGACAACGAATTACCAACTTTCAATATCGAGAATATGCAAAGCAACATGAAGGTGATATACTACAGTCGAACATTCATGTCCATCATTGGTGGAGTGATTGCTGGAATATTGGGATTCACAGGGCTGATGGGGTTTGTGTTTTATATACTTGTCATGGGTATTAC...
Protein
Download Protein FASTA135 aa · LXL04_022586|LXL04_022586|OH1004|PROTEIN
MRNLLFPLPVLTKKVETMGGHDDSSVSEKKSIDNELPTFNIENMQSNMKVIYYSRTFMSIIGGVIAGILGFTGLMGFVFYILVMGITSLCLTIKAGFSIHSYFDSWNRILLDGFLGGLLSFVLFWTFAYDIVHIF
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_022586 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_022586 |
|---|---|
| Location | Chr05:2031155-2032043 (-) |
| Description | Similar to Emc6: ER membrane protein complex subunit 6 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0000045 autophagosome assembly Biological Process GO:0045050 protein insertion into ER membrane by stop-transfer membrane-anchor sequence Biological Process GO:0071816 tail-anchored membrane protein insertion into ER membrane Biological Process GO:0005789 endoplasmic reticulum membrane Cellular Component GO:0016020 membrane Cellular Component GO:0072546 EMC complex Cellular Component GO:1903349 omegasome membrane Cellular Component GO:0032977 membrane insertase activity Molecular Function |
| KEGG gene cross-reference | ddi:DDB_G0280399 dre:337220 hsa:83460 mmu:66048 xtr:448052 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF07019.18EMC650-129 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_022586 | PF07019.18 | EMC6 | 50 | 129 | 8.5e-22 | 78.1 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.