Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1299 bp · LXL04_022585|LXL04_022585|OH1004|cDNA
ATGGCGAAAAAACAAGGCCGGCGTGCACCAGTTAAGTCCGACCGCCGATCAAGCAGTTCAGTGCCTTCGAATCGAGAGGATCCTTCAATTCGTCTCCTTAACCCTAACAAACGCCTTACCCTGCTCAACACTCTACTCATCCTGATCGTAACTCCTGCCATTTCAGCATATATATACCGTATGCTATACGCTGGGAATACTGACCTAGACCCTTCGCTTCCGTTTGTATACCAACGCGGCCTAGTGAAGACTGACATTAA...
1299 bp · LXL04_022585|LXL04_022585|OH1004|CDS
ATGGCGAAAAAACAAGGCCGGCGTGCACCAGTTAAGTCCGACCGCCGATCAAGCAGTTCAGTGCCTTCGAATCGAGAGGATCCTTCAATTCGTCTCCTTAACCCTAACAAACGCCTTACCCTGCTCAACACTCTACTCATCCTGATCGTAACTCCTGCCATTTCAGCATATATATACCGTATGCTATACGCTGGGAATACTGACCTAGACCCTTCGCTTCCGTTTGTATACCAACGCGGCCTAGTGAAGACTGACATTAA...
Protein
Download Protein FASTA432 aa · LXL04_022585|LXL04_022585|OH1004|PROTEIN
MAKKQGRRAPVKSDRRSSSSVPSNREDPSIRLLNPNKRLTLLNTLLILIVTPAISAYIYRMLYAGNTDLDPSLPFVYQRGLVKTDINYQEILTENAKVSQNTSIRHFPYPVLAYVTPWNSKGYELAKKFNSKITHISPVWYDLKSQGAEFVLEGRHNVDKGWISDLRMKGNALILPRVVLEAIPMDLLKKKKQRAKVIDLMLTECKEMGFDGIVLESWSRWAAYGVLHDPHMRKLALQFVKKLGQTMHSVGNLQLIYVIG...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_022585 |
|---|---|
| TK1151 ID | TkA06G474310 |
| OH-1004 ID | LXL04_022585 |
| Relationship / confidence | Sequence Supported Annotation Or Model Conflict / Review |
| Protein identity (%) | 99.300 |
| Protein coverage (%) | TK1151 93.168 / OH-1004 34.722Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_022585 |
|---|---|
| Location | Chr05:2010043-2012768 (+) |
| Description | Similar to chid1: Chitinase domain-containing protein 1 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0005975 carbohydrate metabolic process Biological Process GO:0045087 innate immune response Biological Process GO:0005576 extracellular region Cellular Component GO:0005615 extracellular space Cellular Component GO:0005764 lysosome Cellular Component GO:0005770 late endosome Cellular Component GO:0005802 trans-Golgi network Cellular Component GO:0012505 endomembrane system Cellular Component GO:0008061 chitin binding Molecular Function GO:0070492 oligosaccharide binding Molecular Function |
| KEGG gene cross-reference | mmu:68038 pon:100174208 rno:293628 xla:447354 xtr:493467 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00704.35Glyco_hydro_18187-423 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_022585 | PF00704.35 | Glyco_hydro_18 | 187 | 423 | 1.6e-14 | 55.1 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.