LXL04_022583 | RubberDandelionOmics

Gene overview

LXL04_022583

Reference: OH-1004 Chr: Chr05 Coordinates: 1977913-1980086 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

804 bp · LXL04_022583|LXL04_022583|OH1004|cDNA

ATGGGGAAAGGTATCCTCAATTACGATGATGAAGAGTCACCGATATGCAAGAAAGCCAAGAAATCTGATGAGACAAAGCCGGTTGCATCATCCTCTTCTGAGGATGAAAATAAGAATTACGGGATTACTTTCAAAGAACTTGGTGGCGTCGACGACGTAGTGAAAGAGTTGGAAATGGGGTTGTCTATTTTCTTACACACACCGACAGTTTTTGGAATTGCAGCGAAACCCACTCGTGGCGTGTTGTTAGTCGGGCCCAC...

CDS

Download CDS FASTA

804 bp · LXL04_022583|LXL04_022583|OH1004|CDS

ATGGGGAAAGGTATCCTCAATTACGATGATGAAGAGTCACCGATATGCAAGAAAGCCAAGAAATCTGATGAGACAAAGCCGGTTGCATCATCCTCTTCTGAGGATGAAAATAAGAATTACGGGATTACTTTCAAAGAACTTGGTGGCGTCGACGACGTAGTGAAAGAGTTGGAAATGGGGTTGTCTATTTTCTTACACACACCGACAGTTTTTGGAATTGCAGCGAAACCCACTCGTGGCGTGTTGTTAGTCGGGCCCAC...

Protein

Download Protein FASTA

267 aa · LXL04_022583|LXL04_022583|OH1004|PROTEIN

MGKGILNYDDEESPICKKAKKSDETKPVASSSSEDENKNYGITFKELGGVDDVVKELEMGLSIFLHTPTVFGIAAKPTRGVLLVGPTGRRGCGKTAVAHAFGNEVGLAFYGVSALELTTCDHIEVIAGNFKLDIEKSLLNELVRCMDNPRNNEVMVIAATDIPQILDPVIKRRRRFEREIYIGLPDETAKLKMLEVVLRGIKVEDNIDLIAISKMTRGFCANDLKGLIDQAGRIVMRRICEKRKVIHEDWLTKPFSDEEL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_022583`
TK1151 ID	TkA06G474340
OH-1004 ID	LXL04_022583
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	78.400
Protein coverage (%)	TK1151 87.075 / OH-1004 57.303 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_022583

Location Chr05:1977913-1980086 (+)

Description Similar to CDC48C: Cell division control protein 48 homolog C

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g01610`	Probably functions in cell division and growth processes.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_022583 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000055 ribosomal large subunit export from nucleus Biological Process

GO:0006364 rRNA processing Biological Process

GO:0015031 protein transport Biological Process

GO:0032092 positive regulation of protein binding Biological Process

GO:0032206 positive regulation of telomere maintenance Biological Process

GO:0042254 ribosome biogenesis Biological Process

GO:0042273 ribosomal large subunit biogenesis Biological Process

GO:0051301 cell division Biological Process

GO:0180023 cytosolic large ribosomal subunit assembly Biological Process

GO:1904749 regulation of protein localization to nucleolus Biological Process

GO:1905323 telomerase holoenzyme complex assembly Biological Process

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT3G01610

hsa:4931

sce:YLL034C

spo:2539968

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.519

Rank 1 · LXL04_022583 · OH-1004

Nucleus0.355

Rank 2 · LXL04_022583 · OH-1004

Mitochondrion0.060

Rank 3 · LXL04_022583 · OH-1004

Endoplasmic reticulum0.050

Rank 4 · LXL04_022583 · OH-1004

Cell membrane0.047

Rank 5 · LXL04_022583 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00004.36AAA123-184 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_022583	`PF00004.36`	AAA	123	184	2.1e-13	51.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SS94`	Arabidopsis thaliana	Cell division control protein 48 homolog C	33.086%	Swiss-Prot	moderate database homology

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