LXL04_022452 | RubberDandelionOmics

Gene overview

LXL04_022452

Reference: OH-1004 Chr: Chr04 Coordinates: 150721849-150725562 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2220 bp · LXL04_022452|LXL04_022452|OH1004|cDNA

ATGGAGCTCCCATTAACAACAATCAGTATCTCTCTAAGACTATCTTCCCCTTCACTCTGCCCTGAACGTTCATTCGATGGGTACTGTAAATACCATTGCCGGTTCTCTAATAAAAAATTACAACTTGGTAGTAATTCGAAACGCCCCCGTCGAATCAAATCGAGTTTCGACAAACATTCTTCATCGTATACACCAATATTGAACAGAGAGGGGGCTTTGAATACATGGGAAGAACCTGAGATTGTGGAAGTCATCGGCAT...

CDS

Download CDS FASTA

2220 bp · LXL04_022452|LXL04_022452|OH1004|CDS

ATGGAGCTCCCATTAACAACAATCAGTATCTCTCTAAGACTATCTTCCCCTTCACTCTGCCCTGAACGTTCATTCGATGGGTACTGTAAATACCATTGCCGGTTCTCTAATAAAAAATTACAACTTGGTAGTAATTCGAAACGCCCCCGTCGAATCAAATCGAGTTTCGACAAACATTCTTCATCGTATACACCAATATTGAACAGAGAGGGGGCTTTGAATACATGGGAAGAACCTGAGATTGTGGAAGTCATCGGCAT...

Protein

Download Protein FASTA

739 aa · LXL04_022452|LXL04_022452|OH1004|PROTEIN

MELPLTTISISLRLSSPSLCPERSFDGYCKYHCRFSNKKLQLGSNSKRPRRIKSSFDKHSSSYTPILNREGALNTWEEPEIVEVIGIGSRKDAVLDFCLSSSSLSRRLRFWNIIVEETFKVQLQQRLLGDDLIFHFADITKTFVQESVAMKSNLKAVILVAGASYGSDLNVVRDIFEAIKLANGFVVTIILKPFRFEGQRRQNEVKDLMYKLEGLTDFCIMIDADALLEKDLVTLDEALQIANNAVLMALNAVSILTSEL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_022452`
TK1151 ID	TkA05G469850
OH-1004 ID	LXL04_022452
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_022452

Location Chr04:150721849-150725562 (+)

Description Similar to ARC3: Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g75010`	Together with MIND1 and MCD1, regulates FtsZ ring positioning in chloroplasts in an ARC6-dependent manner.	The distinctive roles of five different ARC genes in the chloroplast division process in Arabidopsis.1999 · DOI: 10.1046/j.1365-313x.1999.00500.x ARC3, a chloroplast division factor, is a chimera of prokaryotic FtsZ and part of eukaryotic phosphatidylinositol-4-phosphate 5-kinase.2004 · DOI: 10.1093/pcp/pch130 Effects of arc3, arc5 and arc6 mutations on plastid morphology and stromule formation in green and nongreen tissues of Arabidopsis thaliana.2008 · DOI: 10.1111/j.1751-1097.2008.00437.x The chloroplast min system functions differentially in two specific nongreen plastids in Arabidopsis thaliana.2013 · DOI: 10.1371/journal.pone.0071190 FtsZ1/FtsZ2 Turnover in Chloroplasts and the Role of ARC3.2015 · DOI: 10.1017/s1431927615000082 MCD1 Associates with FtsZ Filaments via the Membrane-Tethering Protein ARC6 to Guide Chloroplast Division.2018 · DOI: 10.1105/tpc.18.00189 ARC3 Activation by PARC6 Promotes FtsZ-Ring Remodeling at the Chloroplast Division Site.2019 · DOI: 10.1105/tpc.18.00948
`At1g60890`	Phosphatidylinositol 4-phosphate 5-kinase 8.	No verified direct reference in this release
`At1g21980`	Catalyzes the synthesis of phosphatidylinositol 4,5- bisphosphate and phosphatidylinositol 3,4-bisphosphate.	AtPIP5K1, an Arabidopsis thaliana phosphatidylinositol phosphate kinase, synthesizes PtdIns(3,4)P(2) and PtdIns(4,5)P(2) in vitro and is inhibited by phosphorylation.2001 · DOI: 10.1042/0264-6021:3590583
`At3g07960`	Phosphatidylinositol 4-phosphate 5-kinase 6.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0701800`	Involved in flowering.	OsPIPK 1, a rice phosphatidylinositol monophosphate kinase, regulates rice heading by modifying the expression of floral induction genes.2004 · DOI: 10.1023/b:plan.0000028796.14336.24

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022452 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009657 plastid organization Biological Process

GO:0010020 chloroplast fission Biological Process

GO:0046854 phosphatidylinositol phosphate biosynthetic process Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0009707 chloroplast outer membrane Cellular Component

GO:0098562 cytoplasmic side of membrane Cellular Component

GO:0003785 actin monomer binding Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT1G21980

ath:AT1G60890

ath:AT1G75010

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.936

Rank 1 · LXL04_022452 · OH-1004

Nucleus0.052

Rank 2 · LXL04_022452 · OH-1004

Mitochondrion0.050

Rank 3 · LXL04_022452 · OH-1004

Cytoplasm0.039

Rank 4 · LXL04_022452 · OH-1004

Cell membrane0.022

Rank 5 · LXL04_022452 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02493.27MORN624-646 aa

PF02493.27MORN647-669 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_022452	`PF02493.27`	MORN	624	646	4.6e-10	39.5
LXL04_022452	`PF02493.27`	MORN	647	669	4.6e-10	39.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q6F6B5`	Arabidopsis thaliana	Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3, chloroplastic	42.820%	Swiss-Prot	moderate database homology
`Q8RY89`	Arabidopsis thaliana	Phosphatidylinositol 4-phosphate 5-kinase 8	39.370%	Swiss-Prot	weak database homology
`Q56YP2`	Arabidopsis thaliana	Phosphatidylinositol 4-phosphate 5-kinase 1	27.404%	Swiss-Prot	weak database homology
`Q9SFB8`	Arabidopsis thaliana	Phosphatidylinositol 4-phosphate 5-kinase 6	32.857%	Swiss-Prot	weak database homology
`Q6EX42`	Oryza sativa subsp. japonica	Phosphatidylinositol 4-phosphate 5-kinase 1	34.646%	Swiss-Prot	weak database homology

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