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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_022413
Reference: OH-1004 Chr: Chr04 Coordinates: 149734019-149736388 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2370 bp · LXL04_022413|LXL04_022413|OH1004|cDNA

ATGTTGCCTCCTCTCATCAGGTTAGCGTCTTGCCGTAATTTGGTAAAAAAATCCTTAAATCTCTGTTCTTTATCCGTTTCATCGCTTGTACAGTCACCCTGTTCCGATGCGTCAGACTCATCTTCTGATGATAACAATACCAATTTGCTTTCTCGACCGCTTGATAAACTCGATAAGTTTGAAGTTATCGAAACCTTGCACAAGTTAAACAGAGAACCCAACATTGCGCTATCATTTATTACGCAACTGAAAGAATCTGG...

CDS

Download CDS FASTA

2370 bp · LXL04_022413|LXL04_022413|OH1004|CDS

ATGTTGCCTCCTCTCATCAGGTTAGCGTCTTGCCGTAATTTGGTAAAAAAATCCTTAAATCTCTGTTCTTTATCCGTTTCATCGCTTGTACAGTCACCCTGTTCCGATGCGTCAGACTCATCTTCTGATGATAACAATACCAATTTGCTTTCTCGACCGCTTGATAAACTCGATAAGTTTGAAGTTATCGAAACCTTGCACAAGTTAAACAGAGAACCCAACATTGCGCTATCATTTATTACGCAACTGAAAGAATCTGG...

Protein

Download Protein FASTA

789 aa · LXL04_022413|LXL04_022413|OH1004|PROTEIN

MLPPLIRLASCRNLVKKSLNLCSLSVSSLVQSPCSDASDSSSDDNNTNLLSRPLDKLDKFEVIETLHKLNREPNIALSFITQLKESGFKHDVVTYMAIVRFLCHWGMDIRLDSMFKDVIDNNNRKLLSFEISDLCDALIEEAEMEGMEKLTKAIDVLVKVYASVGRFEEAIDIFYKIKRGKLVLSTRTCNYLMNQLIEFGKLDMVESVYRQLKMKGLIPNVYTFGILIKALCRKGSWKEAIVVFTQMKEAGVESNAFTFG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_022413
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_022413
LocationChr04:149734019-149736388 (+)
DescriptionSimilar to At2g26790: Pentatricopeptide repeat-containing protein At2g26790, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g26790 Pentatricopeptide repeat-containing protein At2g26790, mitochondrial. No verified direct reference in this release
At1g13800 Putative pentatricopeptide repeat-containing protein At1g13800. No verified direct reference in this release
At5g01110 Pentatricopeptide repeat-containing protein At5g01110. No verified direct reference in this release
At1g64100 Pentatricopeptide repeat-containing protein At1g64100. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: Q76C99 Reduces the expression of the cytoplasmic male sterility (CMS)-associated mitochondrial gene ORF79, encoding a cytotoxic peptide. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022413 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0005739 mitochondrion Cellular Component
KEGG gene cross-reference
ath:AT1G13800
ath:AT2G26790
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.838
Rank 1 · LXL04_022413 · OH-1004
Plastid0.086
Rank 2 · LXL04_022413 · OH-1004
Nucleus0.050
Rank 3 · LXL04_022413 · OH-1004
Cytoplasm0.038
Rank 4 · LXL04_022413 · OH-1004
Cell membrane0.013
Rank 5 · LXL04_022413 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29070.1MSC6_N142-239 aa
PF29070.1MSC6_N183-281 aa
PF13041.13PPR_2186-233 aa
PF23276.3TPR_24197-314 aa
PF13812.13PPR_3208-264 aa
PF12854.14PPR_1215-248 aa
PF01535.27PPR222-252 aa
PF13041.13PPR_2226-267 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_022413PF29070.1MSC6_N1422391.2e-33117.5
LXL04_022413PF29070.1MSC6_N1832811.2e-33117.5
LXL04_022413PF13041.13PPR_21862332.4e-136444.5
LXL04_022413PF23276.3TPR_241973147.3e-46156.1
LXL04_022413PF13812.13PPR_32082641.9e-64214.3
LXL04_022413PF12854.14PPR_12152484.5e-109356.5
LXL04_022413PF01535.27PPR2222523.6e-96309.6
LXL04_022413PF13041.13PPR_22262672.4e-136444.5
LXL04_022413PF17177.11PPR_long2403609.8e-29101.0
LXL04_022413PF12854.14PPR_12512804.5e-109356.5
LXL04_022413PF13041.13PPR_22613032.4e-136444.5
LXL04_022413PF29070.1MSC6_N2664541.2e-33117.5
LXL04_022413PF13812.13PPR_32793351.9e-64214.3
LXL04_022413PF13041.13PPR_22903382.4e-136444.5
LXL04_022413PF23276.3TPR_243134187.3e-46156.1
LXL04_022413PF12854.14PPR_13213534.5e-109356.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O81028Arabidopsis thalianaPentatricopeptide repeat-containing protein At2g26790, mitochondrial35.917%Swiss-Protmoderate database homology
Q9LMH5Arabidopsis thalianaPutative pentatricopeptide repeat-containing protein At1g1380032.304%Swiss-Protmoderate database homology
Q9LFC5Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g0111025.968%Swiss-Protweak database homology
Q9SH60Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g6410025.938%Swiss-Protweak database homology
Q76C99Oryza sativa subsp. indicaProtein Rf1, mitochondrial26.768%Swiss-Protweak database homology

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