LXL04_022388 | RubberDandelionOmics

Gene overview

LXL04_022388

Reference: OH-1004 Chr: Chr04 Coordinates: 149465209-149471762 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1473 bp · LXL04_022388|LXL04_022388|OH1004|cDNA

ATGGAGGTAAGTGGAGTGTGTTGTGTGGGGGGACTAGTAGCAATATTGGTGTTCTTTGTGTCGGGATTTTTGAATTGGGTATGGTTCAAACCAAAGAAGATAGAGAAGTTTCTAAGAGATCAAGGTCTTAAGGGCAGCTCATATAAATTCTTGTTTGGAGATATAAAAGAGATGGTGCGGTTGACAATCGAAGCGGAATCTAAACCCATTAGCCTATCGGGTGATATAGTTCCTCGTGTCTTGCCCTTTGTTCATAAATC...

CDS

Download CDS FASTA

1473 bp · LXL04_022388|LXL04_022388|OH1004|CDS

ATGGAGGTAAGTGGAGTGTGTTGTGTGGGGGGACTAGTAGCAATATTGGTGTTCTTTGTGTCGGGATTTTTGAATTGGGTATGGTTCAAACCAAAGAAGATAGAGAAGTTTCTAAGAGATCAAGGTCTTAAGGGCAGCTCATATAAATTCTTGTTTGGAGATATAAAAGAGATGGTGCGGTTGACAATCGAAGCGGAATCTAAACCCATTAGCCTATCGGGTGATATAGTTCCTCGTGTCTTGCCCTTTGTTCATAAATC...

Protein

Download Protein FASTA

490 aa · LXL04_022388|LXL04_022388|OH1004|PROTEIN

MEVSGVCCVGGLVAILVFFVSGFLNWVWFKPKKIEKFLRDQGLKGSSYKFLFGDIKEMVRLTIEAESKPISLSGDIVPRVLPFVHKSVITHGKICFTWMGNKPVLYVSEPSMIPEILANYNQFQKQRGGHPLIKLLHRGLFDTETDQWVKHRKIINPAFHVEKLKQLVPAFYISCGEMIEKWDKMLTNESSCEVDVWPHVQTFASDVISRTAFGSSFEEGRKIFELQREQIELLRKATQSIYIPGSRFLPTKSNKRIKEI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_022388`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_022388

Location Chr04:149465209-149471762 (-)

Description Similar to Cytochrome P450 CYP72A219

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g14690`	Cytochrome P450 72A15.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_022388 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009753 response to jasmonic acid Biological Process

GO:0009820 alkaloid metabolic process Biological Process

GO:0016135 saponin biosynthetic process Biological Process

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0004497 monooxygenase activity Molecular Function

GO:0005506 iron ion binding Molecular Function

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen Molecular Function

GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen Molecular Function

GO:0020037 heme binding Molecular Function

KEGG gene cross-reference

ag:ABC59075

ath:AT3G14690

mtr:25486186

mtr:25486777

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.914

Rank 1 · LXL04_022388 · OH-1004

Cytoplasm0.048

Rank 2 · LXL04_022388 · OH-1004

Cell membrane0.038

Rank 3 · LXL04_022388 · OH-1004

Golgi apparatus0.026

Rank 4 · LXL04_022388 · OH-1004

Nucleus0.026

Rank 5 · LXL04_022388 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00067.28p45090-477 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_022388	`PF00067.28`	p450	90	477	4.1e-66	224.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LUC5`	Arabidopsis thaliana	Cytochrome P450 72A15	48.708%	Swiss-Prot	moderate database homology

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