LXL04_022362 | RubberDandelionOmics

Gene overview

LXL04_022362

Reference: OH-1004 Chr: Chr04 Coordinates: 149198152-149206233 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3345 bp · LXL04_022362|LXL04_022362|OH1004|cDNA

ATGACAGGAGAAATATCAAAGTTTCACAAACTAGACGAGAAGGTGACGGGTCACACTCAGTTTGGAGACGGATCAAAGATCAACATCCAAGGAAAATGTTCAATCTTGTTTGATTGCCAAAATGGAGATCAAAAGTTACTTGATAAGGTATATTACATTCCTAGACTTAAAATTAATATTATAAGTCTTGGACAACTAACCGAAGATGGATATCAAGTCGACATGGATGGCGATATTCTCCGGATATTCGACACCGATAA...

CDS

Download CDS FASTA

3345 bp · LXL04_022362|LXL04_022362|OH1004|CDS

ATGACAGGAGAAATATCAAAGTTTCACAAACTAGACGAGAAGGTGACGGGTCACACTCAGTTTGGAGACGGATCAAAGATCAACATCCAAGGAAAATGTTCAATCTTGTTTGATTGCCAAAATGGAGATCAAAAGTTACTTGATAAGGTATATTACATTCCTAGACTTAAAATTAATATTATAAGTCTTGGACAACTAACCGAAGATGGATATCAAGTCGACATGGATGGCGATATTCTCCGGATATTCGACACCGATAA...

Protein

Download Protein FASTA

1114 aa · LXL04_022362|LXL04_022362|OH1004|PROTEIN

MTGEISKFHKLDEKVTGHTQFGDGSKINIQGKCSILFDCQNGDQKLLDKVYYIPRLKINIISLGQLTEDGYQVDMDGDILRIFDTDNTLPFKVKRSSNRIYKTILRTCHTMCLAPTQDDNGWLWHARNSSKEGEKGHLCHVRHEVKEGEKGHQFFDPDKRNLRSQDVSQKKEVVSQKNKVVSLKKEEASLRKDEPLPKEKVEDMVEFSDNDFGGDKTGDKHTSEISLYIKETNITWQSQRTVTLSILDFMTANAMECQIV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_022362`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_022362

Location Chr04:149198152-149206233 (-)

Description Similar to Cytochrome P450 CYP72A219

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g14680`	Cytochrome P450 72A14.	No verified direct reference in this release
`At3g14690`	Cytochrome P450 72A15.	No verified direct reference in this release
`At3g14660`	Cytochrome P450 72A13.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_022362 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006694 steroid biosynthetic process Biological Process

GO:0008203 cholesterol metabolic process Biological Process

GO:0016135 saponin biosynthetic process Biological Process

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0004497 monooxygenase activity Molecular Function

GO:0005506 iron ion binding Molecular Function

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen Molecular Function

GO:0020037 heme binding Molecular Function

KEGG gene cross-reference

ath:AT3G14660

ath:AT3G14680

ath:AT3G14690

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.379

Rank 1 · LXL04_022362 · OH-1004

Nucleus0.248

Rank 2 · LXL04_022362 · OH-1004

Mitochondrion0.133

Rank 3 · LXL04_022362 · OH-1004

Endoplasmic reticulum0.082

Rank 4 · LXL04_022362 · OH-1004

Cell membrane0.079

Rank 5 · LXL04_022362 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22936.2Pol_BBD1-71 aa

PF00067.28p450450-572 aa

PF00076.29RRM_1639-707 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_022362	`PF22936.2`	Pol_BBD	1	71	1.9e-15	57.7
LXL04_022362	`PF00067.28`	p450	450	572	1.9e-37	129.9
LXL04_022362	`PF00076.29`	RRM_1	639	707	1.2e-09	38.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LUC6`	Arabidopsis thaliana	Cytochrome P450 72A14	43.175%	Swiss-Prot	weak database homology
`Q9LUC5`	Arabidopsis thaliana	Cytochrome P450 72A15	41.905%	Swiss-Prot	weak database homology
`Q9LUC8`	Arabidopsis thaliana	Cytochrome P450 72A13	41.195%	Swiss-Prot	weak database homology

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