LXL04_022291 | RubberDandelionOmics

Gene overview

LXL04_022291

Reference: OH-1004 Chr: Chr04 Coordinates: 147658666-147661771 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

876 bp · LXL04_022291|LXL04_022291|OH1004|cDNA

ATGCAGCTGCGGAGATGTTCATATTATCAAAACTCAGTTGCAGTTTGGGTTGCCGATACTTCGCTTATTGAACAACATGGGGATAGTATCTTAAAAGACAGAGTAGTGAGTCCAAGAATATCCACCATTTCTTCAGATGATGACACAAAagatataaaaaatatatatgtggACAGTGAGGAGTTGTTTAAAAAAGGATTTCAAGACTTACTCATTAAGGGGAGTTATAAAGTCAGATCTTATGGGTGGGTATACGAGTA...

CDS

Download CDS FASTA

876 bp · LXL04_022291|LXL04_022291|OH1004|CDS

ATGCAGCTGCGGAGATGTTCATATTATCAAAACTCAGTTGCAGTTTGGGTTGCCGATACTTCGCTTATTGAACAACATGGGGATAGTATCTTAAAAGACAGAGTAGTGAGTCCAAGAATATCCACCATTTCTTCAGATGATGACACAAAAGATATAAAAAATATATATGTGGACAGTGAGGAGTTGTTTAAAAAAGGATTTCAAGACTTACTCATTAAGGGGAGTTATAAAGTCAGATCTTATGGGTGGGTATACGAGTA...

Protein

Download Protein FASTA

291 aa · LXL04_022291|LXL04_022291|OH1004|PROTEIN

MQLRRCSYYQNSVAVWVADTSLIEQHGDSILKDRVVSPRISTISSDDDTKDIKNIYVDSEELFKKGFQDLLIKGSYKVRSYGWVYEYEVVQGGWWRGLVLGGDQVNVIVFFAYRAVGDQHYIFPKTHLRIHQKWCLSGGCIFWLYRKRLIDEAFQVGDEVEIVGSEGMHKFSLYRAQIVGMHGELVEVEYYNRLTFGGERLSEFVLPTKVRSIPDAVVGDFKPTDFVDAWLEGGWWGGIVLGGNEQSAIIFFPYKPTGNQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_022291`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_022291

Location Chr04:147658666-147661771 (-)

Description Similar to AGDP1: Protein AGENET DOMAIN (AGD)-CONTAINING P1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g09320`	Heterochromatin-binding protein that preferentially occupies long transposons and specifically recognizes the histone H3 'Lys-9' methylation (H3K9me) marks, with a stronger affinity for dimethylated H3K9 (H3K9me2).	Arabidopsis AGDP1 links H3K9me2 to DNA methylation in heterochromatin.2018 · DOI: 10.1038/s41467-018-06965-w Plant HP1 protein ADCP1 links multivalent H3K9 methylation readout to heterochromatin formation.2019 · DOI: 10.1038/s41422-018-0104-9
`At1g61210`	May participate in a complex which severs microtubules in an ATP-dependent manner (By similarity).	DWA3, an Arabidopsis DWD protein, acts as a negative regulator in ABA signal transduction.2011 · DOI: 10.1016/j.plantsci.2010.10.008
`At1g11160`	May participate in a complex which severs microtubules in an ATP-dependent manner (By similarity).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022291 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006346 DNA methylation-dependent constitutive heterochromatin formation Biological Process

GO:0007019 microtubule depolymerization Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0051013 microtubule severing Biological Process

GO:0051510 regulation of unidimensional cell growth Biological Process

GO:0000775 chromosome, centromeric region Cellular Component

GO:0000792 heterochromatin Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005874 microtubule Cellular Component

GO:0008352 katanin complex Cellular Component

KEGG gene cross-reference

ath:AT1G09320

ath:AT1G11160

ath:AT1G61210

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.502

Rank 1 · LXL04_022291 · OH-1004

Nucleus0.477

Rank 2 · LXL04_022291 · OH-1004

Endoplasmic reticulum0.072

Rank 3 · LXL04_022291 · OH-1004

Cell membrane0.061

Rank 4 · LXL04_022291 · OH-1004

Mitochondrion0.040

Rank 5 · LXL04_022291 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q500V5`	Arabidopsis thaliana	Protein AGENET DOMAIN (AGD)-CONTAINING P1	26.961%	Swiss-Prot	weak database homology
`F4HTH8`	Arabidopsis thaliana	Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.2	46.053%	Swiss-Prot	weak database homology
`A0A1P8AW69`	Arabidopsis thaliana	Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.1	39.726%	Swiss-Prot	weak database homology

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