LXL04_022285 | RubberDandelionOmics

Gene overview

LXL04_022285

Reference: OH-1004 Chr: Chr04 Coordinates: 147526922-147536526 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1467 bp · LXL04_022285|LXL04_022285|OH1004|cDNA

ATGACGGAGAAGACAGTCATGTCGTCAGGGCTGGGCCACCTTTTCATGACGGTGTTTGTGTTCAATTTCGCCAATTTCATGGTGGTTCCGGCGATCACTGATGTCAGCATGGCTGCACTTTGTCCCGGAGAAGATGAGTGCTCCTTAGCGATTTACCTCACCGGTGTTCAACAAGCGATAACAGGGATGGGAAGCCTAGTCATGATGCCATTGATCGGAAACCTCTCGGACCATTATGGAAGGAAAGTCATGCTCACTGT...

CDS

Download CDS FASTA

1467 bp · LXL04_022285|LXL04_022285|OH1004|CDS

ATGACGGAGAAGACAGTCATGTCGTCAGGGCTGGGCCACCTTTTCATGACGGTGTTTGTGTTCAATTTCGCCAATTTCATGGTGGTTCCGGCGATCACTGATGTCAGCATGGCTGCACTTTGTCCCGGAGAAGATGAGTGCTCCTTAGCGATTTACCTCACCGGTGTTCAACAAGCGATAACAGGGATGGGAAGCCTAGTCATGATGCCATTGATCGGAAACCTCTCGGACCATTATGGAAGGAAAGTCATGCTCACTGT...

Protein

Download Protein FASTA

488 aa · LXL04_022285|LXL04_022285|OH1004|PROTEIN

MTEKTVMSSGLGHLFMTVFVFNFANFMVVPAITDVSMAALCPGEDECSLAIYLTGVQQAITGMGSLVMMPLIGNLSDHYGRKVMLTVPMLLSTLPLVILAYSRERNFFYAYYGLKTLTSMVCEGGVLCLANAYVADNVALSRRASAFGILAGISSCSFVFGSLFTRFLPSTASVFQVSAAVAMVSVVYMRIFLPESSMEAAVIAVSMKEETVNDCLLEKGCANNRRPSRTTPSLHDSIALLRSRYVDIVDYRVGILEDAN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_022285`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_022285`
Location	Chr04:147526922-147536526 (-)
Description	Similar to Mfsd14a: Hippocampus abundant transcript 1 protein
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_022285` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0001675 acrosome assembly Biological Process GO:0007283 spermatogenesis Biological Process GO:0007286 spermatid development Biological Process GO:0007289 spermatid nucleus differentiation Biological Process GO:0030382 sperm mitochondrion organization Biological Process GO:0046677 response to antibiotic Biological Process GO:1902600 proton transmembrane transport Biological Process GO:0000139 Golgi membrane Cellular Component GO:0005789 endoplasmic reticulum membrane Cellular Component GO:0005886 plasma membrane Cellular Component GO:0015297 antiporter activity Molecular Function GO:0022857 transmembrane transporter activity Molecular Function
KEGG gene cross-reference	ag:AAA71915 bta:510635 hsa:64645 hsa:84641 mmu:15247 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.324

Rank 1 · LXL04_022285 · OH-1004

Endoplasmic reticulum0.206

Rank 2 · LXL04_022285 · OH-1004

Cell membrane0.201

Rank 3 · LXL04_022285 · OH-1004

Golgi apparatus0.178

Rank 4 · LXL04_022285 · OH-1004

Cytoplasm0.151

Rank 5 · LXL04_022285 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07690.22MFS_114-199 aa

PF07690.22MFS_1291-474 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_022285	`PF07690.22`	MFS_1	14	199	2.3e-31	109.7
LXL04_022285	`PF07690.22`	MFS_1	291	474	2.3e-31	109.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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