Gene Card
Gene overview
cDNA / CDS / Protein Sequences
759 bp · LXL04_022273|LXL04_022273|OH1004|cDNA
ATGGGACGATTGTTCTTCGTCGGCGGCAACTGGAAATGCAACGGAACTTCGGAAGATGTTAAGAAGATCGTTGCAACACTTAATGGTGGTCAAGTTCCATCTAAAGATGTCGTAGAGATTGTCGTGAGCCCTCCATTGGTATTCATCCCCAGTGTCAAAACCGAATTGAAGCCTGAGTTCCAAATCGCTGCCCAAAATTGTTGGGTTAAGAAAGGAGGCGCATTCACCGGTGAAATTAGTGCAGAGATGCTAGTGAACAT...
759 bp · LXL04_022273|LXL04_022273|OH1004|CDS
ATGGGACGATTGTTCTTCGTCGGCGGCAACTGGAAATGCAACGGAACTTCGGAAGATGTTAAGAAGATCGTTGCAACACTTAATGGTGGTCAAGTTCCATCTAAAGATGTCGTAGAGATTGTCGTGAGCCCTCCATTGGTATTCATCCCCAGTGTCAAAACCGAATTGAAGCCTGAGTTCCAAATCGCTGCCCAAAATTGTTGGGTTAAGAAAGGAGGCGCATTCACCGGTGAAATTAGTGCAGAGATGCTAGTGAACAT...
Protein
Download Protein FASTA252 aa · LXL04_022273|LXL04_022273|OH1004|PROTEIN
MGRLFFVGGNWKCNGTSEDVKKIVATLNGGQVPSKDVVEIVVSPPLVFIPSVKTELKPEFQIAAQNCWVKKGGAFTGEISAEMLVNMGIPWVIIGHSERRALMNESNEFVGDKVAYALSQGLKVIACVGETLEERDAGTTMKVVAAQTKAIADKISSWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLETNIKAEVAASARIIYGGSVNGSNCKELAGQKDLDGFLVGGASLKPEFIDIIKAAEVKK
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_022273 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_022273 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr04:147245225-147247027 (-) | ||||||||||||
| Description | Similar to TPIP1: Triosephosphate isomerase, cytosolic | ||||||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
Rice
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| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||||||||
| GO annotations (OH1004 source) | GO:0005975 carbohydrate metabolic process Biological Process GO:0006094 gluconeogenesis Biological Process GO:0006096 glycolytic process Biological Process GO:0010043 response to zinc ion Biological Process GO:0019563 glycerol catabolic process Biological Process GO:0046166 glyceraldehyde-3-phosphate biosynthetic process Biological Process GO:0000325 plant-type vacuole Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005739 mitochondrion Cellular Component GO:0005829 cytosol Cellular Component GO:0005886 plasma membrane Cellular Component GO:0009505 plant-type cell wall Cellular Component | ||||||||||||
| KEGG gene cross-reference | ath:AT3G55440 dosa:Os01g0147900 zma:100272481 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00121.25TIM6-248 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_022273 | PF00121.25 | TIM | 6 | 248 | 2.2e-90 | 303.2 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.