LXL04_022217 | RubberDandelionOmics

Gene overview

LXL04_022217

Reference: OH-1004 Chr: Chr04 Coordinates: 146324326-146327655 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1848 bp · LXL04_022217|LXL04_022217|OH1004|cDNA

ATGGGATCAGATTATGGACTACCCAGAGACCTTTCACATCTTCAAAAGGCTCGATCCTTCTACAAACCATCGCTTCCTCCTTGTCTTCAGGGAACCACTGTACGAGTAGAATTTGGTGATGCAACTACTGCTGCAGATCCGTCTGGTGCTCAGGCCATTAGTCAATCATTTCCTCACACTTACGGACAGCCTTTGGCTCATTTTCTTAAACCTACATCCATCGTCCCCGATGCTCAGATTATCAACCAACATCCTGCAAT...

CDS

Download CDS FASTA

1848 bp · LXL04_022217|LXL04_022217|OH1004|CDS

ATGGGATCAGATTATGGACTACCCAGAGACCTTTCACATCTTCAAAAGGCTCGATCCTTCTACAAACCATCGCTTCCTCCTTGTCTTCAGGGAACCACTGTACGAGTAGAATTTGGTGATGCAACTACTGCTGCAGATCCGTCTGGTGCTCAGGCCATTAGTCAATCATTTCCTCACACTTACGGACAGCCTTTGGCTCATTTTCTTAAACCTACATCCATCGTCCCCGATGCTCAGATTATCAACCAACATCCTGCAAT...

Protein

Download Protein FASTA

615 aa · LXL04_022217|LXL04_022217|OH1004|PROTEIN

MGSDYGLPRDLSHLQKARSFYKPSLPPCLQGTTVRVEFGDATTAADPSGAQAISQSFPHTYGQPLAHFLKPTSIVPDAQIINQHPAIKVGLVFCGRQSPGGHNVVWGLHEALKIHNPASTLLGFLGGSEGLFAQKTLEITDEVLTTYKNQGGYDLLGRSKDQIRTTEQVNSAMAACNALELDGLVIVGGVTSNTDAAHLAETFSQSKCSTKVIGVPVTLNGDLKNQFVEANVGFDTVCKVDSQLISNLCTDALSAGKYYY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_022217`
TK1151 ID	TkA05G451780
OH-1004 ID	LXL04_022217
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_022217

Location Chr04:146324326-146327655 (+)

Description Similar to PFP-ALPHA: Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g76550`	Regulatory subunit of pyrophosphate--fructose 6-phosphate 1-phosphotransferase.	No verified direct reference in this release
`At1g20950`	Regulatory subunit of pyrophosphate--fructose 6-phosphate 1-phosphotransferase.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022217 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006002 fructose 6-phosphate metabolic process Biological Process

GO:0009744 response to sucrose Biological Process

GO:0009749 response to glucose Biological Process

GO:0009750 response to fructose Biological Process

GO:0015979 photosynthesis Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

GO:0000287 magnesium ion binding Molecular Function

GO:0003872 6-phosphofructokinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT1G20950

ath:AT1G76550

sot:102577617

sta:STHERM_c17480

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.664

Rank 1 · LXL04_022217 · OH-1004

Nucleus0.201

Rank 2 · LXL04_022217 · OH-1004

Mitochondrion0.135

Rank 3 · LXL04_022217 · OH-1004

Cell membrane0.113

Rank 4 · LXL04_022217 · OH-1004

Golgi apparatus0.076

Rank 5 · LXL04_022217 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00365.26PFK88-454 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_022217	`PF00365.26`	PFK	88	454	1.5e-25	90.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9C9K3`	Arabidopsis thaliana	Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha 2	77.612%	Swiss-Prot	strong database homology
`Q9SYP2`	Arabidopsis thaliana	Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha 1	77.213%	Swiss-Prot	strong database homology

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