How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp

Gene overview

LXL04_022151
Reference: OH-1004 Chr: Chr04 Coordinates: 145372427-145377459 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

3060 bp · LXL04_022151|LXL04_022151|OH1004|cDNA

ATGTGGAAGTTGAAATTACCCCCTCAAGCGTGGGGGAATATTCCcaaaataaacaaaaaacaaaGAGGATTTAGTTCGAATATGGCAGACTCAAGGGTCGATGTCATACTTGAATTCCTCAAAAGGAATAACTTTTCTAGAGCTGAAGCAGCATTGCGAAGTGAGATTGATAACAGGCCTGATTTGAATGGGTTTATGCAAGATCTCAACATTGGAGAAAAGGATTTGTTAGAAAATGAGAAGACCACAAAACCTGTTGC...

3060 bp · LXL04_022151|LXL04_022151|OH1004|CDS

ATGTGGAAGTTGAAATTACCCCCTCAAGCGTGGGGGAATATTCCCAAAATAAACAAAAAACAAAGAGGATTTAGTTCGAATATGGCAGACTCAAGGGTCGATGTCATACTTGAATTCCTCAAAAGGAATAACTTTTCTAGAGCTGAAGCAGCATTGCGAAGTGAGATTGATAACAGGCCTGATTTGAATGGGTTTATGCAAGATCTCAACATTGGAGAAAAGGATTTGTTAGAAAATGAGAAGACCACAAAACCTGTTGC...

1019 aa · LXL04_022151|LXL04_022151|OH1004|PROTEIN

MWKLKLPPQAWGNIPKINKKQRGFSSNMADSRVDVILEFLKRNNFSRAEAALRSEIDNRPDLNGFMQDLNIGEKDLLENEKTTKPVASGNREKSSSTSDEASKEEHIVKEVEFGTKRNGPDSKWEIGSFEGDQNSEQLEAKNKNFVFSNGSDDNLLDLYTWRFNPSNGYDDDDDDDDNDNDGHGIRAESVKEYQVSSLSKIHPSESSNTDGKVSFLGPVSTKTDLIPKQQIMDKLVDPKGQFSQKDGFVDNPWSRNDEFN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDLXL04_022151
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_022151
LocationChr04:145372427-145377459 (-)
DescriptionSimilar to DYRK4: Dual specificity tyrosine-phosphorylation-regulated kinase 4
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022151 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0006468 protein phosphorylation Biological Process
GO:0007224 smoothened signaling pathway Biological Process
GO:0010972 negative regulation of G2/M transition of mitotic cell cycle Biological Process
GO:0018108 peptidyl-tyrosine phosphorylation Biological Process
GO:0023052 signaling Biological Process
GO:0030950 establishment or maintenance of actin cytoskeleton polarity Biological Process
GO:0031569 mitotic G2 cell size control checkpoint signaling Biological Process
GO:0032878 regulation of establishment or maintenance of cell polarity Biological Process
GO:0032956 regulation of actin cytoskeleton organization Biological Process
GO:0045725 positive regulation of glycogen biosynthetic process Biological Process
GO:0051519 activation of bipolar cell growth Biological Process
GO:0061245 establishment or maintenance of bipolar cell polarity Biological Process
KEGG gene cross-reference
ddi:DDB_G0293750
hsa:8798
mmu:69181
spo:2541889
spo:2542228
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.622
Rank 1 · LXL04_022151 · OH-1004
Cytoplasm0.368
Rank 2 · LXL04_022151 · OH-1004
Cell membrane0.064
Rank 3 · LXL04_022151 · OH-1004
Endoplasmic reticulum0.038
Rank 4 · LXL04_022151 · OH-1004
Golgi apparatus0.035
Rank 5 · LXL04_022151 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase708-1010 aa
PF07714.24PK_Tyr_Ser-Thr710-915 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_022151PF00069.32Pkinase70810101e-50173.3
LXL04_022151PF07714.24PK_Tyr_Ser-Thr7109152.1e-1764.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser