LXL04_022140 | RubberDandelionOmics

Gene overview

LXL04_022140

Reference: OH-1004 Chr: Chr04 Coordinates: 145201611-145203717 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1068 bp · LXL04_022140|LXL04_022140|OH1004|cDNA

ATGAAAAAGCAAGCATTTATGGTGTTCTTTTGCCTCTACATGGGCGCCATGGATGTCGGAAATTCCGATGAGAGATTTCCAGTTAGCTATGGTGGGCGGCATCACGGGCGGCAAAAGTTGAAAGTGTTTGTGTTTGGAGACTCGTATGCGGATACTGGAAACTGGCCAAAATCATACGGCGGGGCATGGGGGAAACCGTATGGTTTGACTTTTCCTGGTAGTCCTTCCGGCAGGTTTTCCGATGGCCGTGTACTCACTGA...

CDS

Download CDS FASTA

1068 bp · LXL04_022140|LXL04_022140|OH1004|CDS

ATGAAAAAGCAAGCATTTATGGTGTTCTTTTGCCTCTACATGGGCGCCATGGATGTCGGAAATTCCGATGAGAGATTTCCAGTTAGCTATGGTGGGCGGCATCACGGGCGGCAAAAGTTGAAAGTGTTTGTGTTTGGAGACTCGTATGCGGATACTGGAAACTGGCCAAAATCATACGGCGGGGCATGGGGGAAACCGTATGGTTTGACTTTTCCTGGTAGTCCTTCCGGCAGGTTTTCCGATGGCCGTGTACTCACTGA...

Protein

Download Protein FASTA

355 aa · LXL04_022140|LXL04_022140|OH1004|PROTEIN

MKKQAFMVFFCLYMGAMDVGNSDERFPVSYGGRHHGRQKLKVFVFGDSYADTGNWPKSYGGAWGKPYGLTFPGSPSGRFSDGRVLTDYIAAILGAKSPITYRGWKSGEKKSIKYGMNFAYGGTGVFNTFVNQPNMTTQIDYFQQFLQETQEQHLLNSSTNSIALLSVAGNDYATYFTSNHTLQELPGLTKSIINQLIINAKRIHELGVQKIGITTMQPLGCLPQFTVSTSYQNCSNTENSVAELHNKVLVESVLKLNNES...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_022140`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_022140

Location Chr04:145201611-145203717 (+)

Description Similar to At5g03610: GDSL esterase/lipase At5g03610

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g03610`	GDSL esterase/lipase At5g03610.	No verified direct reference in this release
`At3g09930`	GDSL esterase/lipase At3g09930.	No verified direct reference in this release
`At5g03600`	GDSL esterase/lipase At5g03600.	No verified direct reference in this release
`At2g36325`	GDSL esterase/lipase At2g36325.	No verified direct reference in this release
`At5g03590`	GDSL esterase/lipase At5g03590.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022140 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0016042 lipid catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0099503 secretory vesicle Cellular Component

GO:0016788 hydrolase activity, acting on ester bonds Molecular Function

KEGG gene cross-reference

ath:AT2G36325

ath:AT3G09930

ath:AT5G03590

ath:AT5G03600

ath:AT5G03610

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.480

Rank 1 · LXL04_022140 · OH-1004

Cell membrane0.168

Rank 2 · LXL04_022140 · OH-1004

Endoplasmic reticulum0.118

Rank 3 · LXL04_022140 · OH-1004

Cytoplasm0.099

Rank 4 · LXL04_022140 · OH-1004

Lysosome / Vacuole0.095

Rank 5 · LXL04_022140 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00657.29Lipase_GDSL42-344 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_022140	`PF00657.29`	Lipase_GDSL	42	344	1.3e-27	98.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LZS7`	Arabidopsis thaliana	GDSL esterase/lipase At5g03610	50.955%	Swiss-Prot	strong database homology
`Q9SF94`	Arabidopsis thaliana	GDSL esterase/lipase At3g09930	49.841%	Swiss-Prot	moderate database homology
`Q9LZS8`	Arabidopsis thaliana	GDSL esterase/lipase At5g03600	36.111%	Swiss-Prot	moderate database homology
`Q8RWJ4`	Arabidopsis thaliana	GDSL esterase/lipase At2g36325	40.187%	Swiss-Prot	moderate database homology
`Q9LZS9`	Arabidopsis thaliana	GDSL esterase/lipase At5g03590	37.383%	Swiss-Prot	moderate database homology

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