LXL04_022030 | RubberDandelionOmics

Gene overview

LXL04_022030

Reference: OH-1004 Chr: Chr04 Coordinates: 143258166-143262169 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1086 bp · LXL04_022030|LXL04_022030|OH1004|cDNA

ATGGGCTCTCGTTACCGTCATTTTCAGCCTCCATCACCTCAAGTACACCATCGACGGCCGTCACTCAAAATCGGTACAAGAATTATGCTCTGCAGCGGCGACCTTTTTAGCTACCACAACAAGTATTACCGGCGACATGCGACAAATCAGCTTCTTCCAGCAGTTGCGAACGACGATTGCTGTGGTGGTTATCACGTCCTCAGATCAAGTCTCCGAACCACCGTCGCTTGTCCGATGAAAACTTCAAACGGAGATGACCG...

CDS

Download CDS FASTA

1086 bp · LXL04_022030|LXL04_022030|OH1004|CDS

ATGGGCTCTCGTTACCGTCATTTTCAGCCTCCATCACCTCAAGTACACCATCGACGGCCGTCACTCAAAATCGGTACAAGAATTATGCTCTGCAGCGGCGACCTTTTTAGCTACCACAACAAGTATTACCGGCGACATGCGACAAATCAGCTTCTTCCAGCAGTTGCGAACGACGATTGCTGTGGTGGTTATCACGTCCTCAGATCAAGTCTCCGAACCACCGTCGCTTGTCCGATGAAAACTTCAAACGGAGATGACCG...

Protein

Download Protein FASTA

361 aa · LXL04_022030|LXL04_022030|OH1004|PROTEIN

MGSRYRHFQPPSPQVHHRRPSLKIGTRIMLCSGDLFSYHNKYYRRHATNQLLPAVANDDCCGGYHVLRSSLRTTVACPMKTSNGDDRRRQANNRLHFHFNWDYEVLTRIRRHAAITQFIHSKETESGKRVVMSAKITKEMDAYRVTRYCVSSATVSASLPHRLLQSLVGLAILGVIADCQDTIKTAPDAHGFINYFGMQVFVRKVIELHDKYLAYVNDCFINHTLFHKACMEMVMPMSSKRDSSMFPEWEYNSTYVEDCW...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_022030`
TK1151 ID	TkA08G393310
OH-1004 ID	LXL04_022030
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	76.800
Protein coverage (%)	TK1151 63.964 / OH-1004 74.515 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_022030

Location Chr04:143258166-143262169 (-)

Description Similar to CUL1: Cullin-1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g02570`	Involved in ubiquitination and subsequent proteasomal degradation of target proteins.	Null mutation of AtCUL1 causes arrest in early embryogenesis in Arabidopsis.2002 · DOI: 10.1091/mbc.e02-02-0077 Arabidopsis CAND1, an unmodified CUL1-interacting protein, is involved in multiple developmental pathways controlled by ubiquitin/proteasome-mediated protein Degradation.2004 · DOI: 10.1105/tpc.021949
`At1g43140`	Putative cullin-like protein 1.	No verified direct reference in this release
`At1g02980`	Core component of multiple SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complexes.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0369000`	Involved in ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022030 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009733 response to auxin Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0009753 response to jasmonic acid Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0009867 jasmonic acid mediated signaling pathway Biological Process

GO:0009873 ethylene-activated signaling pathway Biological Process

GO:0010087 phloem or xylem histogenesis Biological Process

GO:0010265 SCF complex assembly Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0042752 regulation of circadian rhythm Biological Process

GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process Biological Process

GO:0048366 leaf development Biological Process

KEGG gene cross-reference

ath:AT1G02980

ath:AT1G43140

ath:AT4G02570

dosa:Os01g0369000

osa:4325735

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.336

Rank 1 · LXL04_022030 · OH-1004

Cell membrane0.302

Rank 2 · LXL04_022030 · OH-1004

Cytoplasm0.272

Rank 3 · LXL04_022030 · OH-1004

Endoplasmic reticulum0.157

Rank 4 · LXL04_022030 · OH-1004

Mitochondrion0.089

Rank 5 · LXL04_022030 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q94AH6`	Arabidopsis thaliana	Cullin-1	73.529%	Swiss-Prot	weak database homology
`P0CH31`	Arabidopsis thaliana	Putative cullin-like protein 1	44.928%	Swiss-Prot	weak database homology
`Q9SRZ0`	Arabidopsis thaliana	Cullin-2	55.882%	Swiss-Prot	weak database homology
`Q5ZC88`	Oryza sativa subsp. japonica	Cullin-1	79.412%	Swiss-Prot	weak database homology

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