LXL04_021787 | RubberDandelionOmics

Gene overview

LXL04_021787

Reference: OH-1004 Chr: Chr04 Coordinates: 136993477-136996457 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

972 bp · LXL04_021787|LXL04_021787|OH1004|cDNA

ATGGCTCTACTCCACCGATTTGGATGCTGTTCTCCTCCTTCTCCTCTTCCTCCTCTCTCGTTCCAAAAGTCAACCTCCGGTTCCGACTCATACACCGTCTCTGCTTTTCAGCGCCGTGTCCGTTATCCGCGGAGATTTTCGTCGTTTAGATTAACCGCAACCCTCGCCGCTGAATCACCGGCAGGCTCTGTGTCAGATGGCGGAGGTGGACCACCGAAACTGCTTATGGAAGTGAAGGACCTCACTGCTGTCATCGCTGA...

CDS

Download CDS FASTA

972 bp · LXL04_021787|LXL04_021787|OH1004|CDS

ATGGCTCTACTCCACCGATTTGGATGCTGTTCTCCTCCTTCTCCTCTTCCTCCTCTCTCGTTCCAAAAGTCAACCTCCGGTTCCGACTCATACACCGTCTCTGCTTTTCAGCGCCGTGTCCGTTATCCGCGGAGATTTTCGTCGTTTAGATTAACCGCAACCCTCGCCGCTGAATCACCGGCAGGCTCTGTGTCAGATGGCGGAGGTGGACCACCGAAACTGCTTATGGAAGTGAAGGACCTCACTGCTGTCATCGCTGA...

Protein

Download Protein FASTA

323 aa · LXL04_021787|LXL04_021787|OH1004|PROTEIN

MALLHRFGCCSPPSPLPPLSFQKSTSGSDSYTVSAFQRRVRYPRRFSSFRLTATLAAESPAGSVSDGGGGPPKLLMEVKDLTAVIAESGKKILNGVNLSIYEGEIHAIMGKNGSGKSTFAKVLVGHRDYEVTGGSVVFKGENLLEMEPEDRSLAGLFLSFQSPVEIPGVSNNDFLHMAYNARQRKLGQTELQPLEFYGHIRPILEMVNIKPDFLNRNVNEGFSGGEKKRNEILQLAVLGADLAILDEIDSGLDVDALRDV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_021787`
TK1151 ID	TkA05G421080
OH-1004 ID	LXL04_021787
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.100
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_021787

Location Chr04:136993477-136996457 (-)

Description Similar to ABCI6: ABC transporter I family member 6, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g10670`	Essential protein.	AtNAP7 is a plastidic SufC-like ATP-binding cassette/ATPase essential for Arabidopsis embryogenesis.2004 · DOI: 10.1073/pnas.0400799101

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_021787 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0010027 thylakoid membrane organization Biological Process

GO:0016226 iron-sulfur cluster assembly Biological Process

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:1990229 iron-sulfur cluster assembly complex Cellular Component

GO:0005524 ATP binding Molecular Function

GO:0016887 ATP hydrolysis activity Molecular Function

GO:0042626 ATPase-coupled transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT3G10670

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.973

Rank 1 · LXL04_021787 · OH-1004

Mitochondrion0.041

Rank 2 · LXL04_021787 · OH-1004

Nucleus0.016

Rank 3 · LXL04_021787 · OH-1004

Cytoplasm0.015

Rank 4 · LXL04_021787 · OH-1004

Cell membrane0.012

Rank 5 · LXL04_021787 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00005.34ABC_tran93-247 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_021787	`PF00005.34`	ABC_tran	93	247	2.4e-20	74.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9CAF5`	Arabidopsis thaliana	ABC transporter I family member 6, chloroplastic	78.947%	Swiss-Prot	strong database homology

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