Gene Card
Gene overview
cDNA / CDS / Protein Sequences
664 bp · LXL04_021743|LXL04_021743|OH1004|cDNA
TTTGATTAATTGAAAACTGAAATGGTGGATGATATCTGTTGATGCTCTAATAGGCGCTTACACCTACGTGTCGGAGCTATGGAGGAAGAAGCAGTCCGATGTGATGCGATTTATGCAGAGGGTGAGGTGCTGGGAGTATCGCCAGCTTCCTTCCATTGTTAGGGTCACTCACCCTACCCGCCCAGATAAGGCTCGCCGCATGGGTTACAAAGCCAAACAGGGTTACGTGATCTACCGAGTACGTGTAAGGCGTGGTGGAA...
648 bp · LXL04_021743|LXL04_021743|OH1004|CDS
CTGAAATGGTGGATGATATCTGTTGATGCTCTAATAGGCGCTTACACCTACGTGTCGGAGCTATGGAGGAAGAAGCAGTCCGATGTGATGCGATTTATGCAGAGGGTGAGGTGCTGGGAGTATCGCCAGCTTCCTTCCATTGTTAGGGTCACTCACCCTACCCGCCCAGATAAGGCTCGCCGCATGGGTTACAAAGCCAAACAGGGTTACGTGATCTACCGAGTACGTGTAAGGCGTGGTGGAAGAAAGAGGCCAGTTCC...
Protein
Download Protein FASTA215 aa · LXL04_021743|LXL04_021743|OH1004|PROTEIN
MKWWMISVDALIGAYTYVSELWRKKQSDVMRFMQRVRCWEYRQLPSIVRVTHPTRPDKARRMGYKAKQGYVIYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWLNEDSTYKYFEVILVDAAHAAIRNDPRINWICNPVHKHRELRGLTSAGKKYRGLRGKGHLNHKARPSRRATWKRNNTLSLRRYR
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_021743 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_021743 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr04:136156031-136156875 (-) | |||||||||
| Description | Similar to RPL15: 60S ribosomal protein L15 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0002181 cytoplasmic translation Biological Process GO:0000325 plant-type vacuole Cellular Component GO:0005730 nucleolus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0022625 cytosolic large ribosomal subunit Cellular Component GO:0022626 cytosolic ribosome Cellular Component GO:0003723 RNA binding Molecular Function GO:0003729 mRNA binding Molecular Function GO:0003735 structural constituent of ribosome Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT4G16720 ath:AT4G17390 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00827.23Ribosomal_L15e13-201 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_021743 | PF00827.23 | Ribosomal_L15e | 13 | 201 | 2e-91 | 305.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.