Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1317 bp · LXL04_021718|LXL04_021718|OH1004|cDNA
ATGAGAGACAGCCATCGATATGTGTTGGTGTCGTGTATGTGTAACAGAAATGAAGAAGAGTCGGCTGGATGGAGGAGGAATCTGGATCTCCGTGTCCGGCGTCGTGAGGAAGAGAAGAAAGGGCGGCGATGGGAGTTTGGCGGCGACTGGAAGCGTGTAGGGTTAGGGTTCATGTGGATCAGTCGTTGGAGAAGAATGGAGGCGGGATACGAGCTTCAAATCCCGTCCATTCTACCATTTTCCCCTAtcaaattccgaaa...
1317 bp · LXL04_021718|LXL04_021718|OH1004|CDS
ATGAGAGACAGCCATCGATATGTGTTGGTGTCGTGTATGTGTAACAGAAATGAAGAAGAGTCGGCTGGATGGAGGAGGAATCTGGATCTCCGTGTCCGGCGTCGTGAGGAAGAGAAGAAAGGGCGGCGATGGGAGTTTGGCGGCGACTGGAAGCGTGTAGGGTTAGGGTTCATGTGGATCAGTCGTTGGAGAAGAATGGAGGCGGGATACGAGCTTCAAATCCCGTCCATTCTACCATTTTCCCCTATCAAATTCCGAAA...
Protein
Download Protein FASTA438 aa · LXL04_021718|LXL04_021718|OH1004|PROTEIN
MRDSHRYVLVSCMCNRNEEESAGWRRNLDLRVRRREEEKKGRRWEFGGDWKRVGLGFMWISRWRRMEAGYELQIPSILPFSPIKFRKSGCYIVDGIYPERSIFVKTLAYPDIRMKTIYEVNCSSISPSLSHALTQAASIAKFENVQPLKEVKSSDSNLLMCFADLEFDYSNLGCTETDTGTGYGYSTGTGNGKNLKFKIRNFEPDWLHNNGDHNAGYDNGIREVDGIKSNSVRVLITELTKCTQHQTEKEVRTNCLMKCQ...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_021718 |
|---|---|
| TK1151 ID | TkA03G561300 |
| OH-1004 ID | LXL04_021718 |
| Relationship / confidence | Sequence Supported Annotation Or Model Conflict / Review |
| Protein identity (%) | 96.000 |
| Protein coverage (%) | TK1151 93.985 / OH-1004 28.539Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_021718 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr04:135855543-135860287 (+) | |||||||||
| Description | Similar to RRT1: Rhamnogalacturonan I rhamnosyltransferase 1 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006004 fucose metabolic process Biological Process GO:0010214 seed coat development Biological Process GO:0010395 rhamnogalacturonan I metabolic process Biological Process GO:0045489 pectin biosynthetic process Biological Process GO:0071555 cell wall organization Biological Process GO:0000139 Golgi membrane Cellular Component GO:0005737 cytoplasm Cellular Component GO:0008194 UDP-glycosyltransferase activity Molecular Function GO:0016757 glycosyltransferase activity Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT3G02250 ath:AT5G15740 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
No result was found for this query.
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.