LXL04_021706 | RubberDandelionOmics

Gene overview

LXL04_021706

Reference: OH-1004 Chr: Chr04 Coordinates: 135623807-135628468 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2208 bp · LXL04_021706|LXL04_021706|OH1004|cDNA

ATGACTACACCCTCAAACAATCCACTTCTACAAGTGGAAACTACATGTGGATCCCTTCTTTATGAACTTCAGATAATATGGGACGAAGTTGGTGAGTCAGATGCAGAAAGGGACAAAATGCTGTTAGAGCTAGAACGTGAATGTCTGGAAGTATACAGACGAAAAGTTGATTTAGCAAACAGAAGTAGAGCTCAATTAAGACAAGCAATTGCTGATTCTGAAGCAGAATTAGCAACCATTTGTTCTGCTATGGGGGAACG...

CDS

Download CDS FASTA

2208 bp · LXL04_021706|LXL04_021706|OH1004|CDS

ATGACTACACCCTCAAACAATCCACTTCTACAAGTGGAAACTACATGTGGATCCCTTCTTTATGAACTTCAGATAATATGGGACGAAGTTGGTGAGTCAGATGCAGAAAGGGACAAAATGCTGTTAGAGCTAGAACGTGAATGTCTGGAAGTATACAGACGAAAAGTTGATTTAGCAAACAGAAGTAGAGCTCAATTAAGACAAGCAATTGCTGATTCTGAAGCAGAATTAGCAACCATTTGTTCTGCTATGGGGGAACG...

Protein

Download Protein FASTA

735 aa · LXL04_021706|LXL04_021706|OH1004|PROTEIN

MTTPSNNPLLQVETTCGSLLYELQIIWDEVGESDAERDKMLLELERECLEVYRRKVDLANRSRAQLRQAIADSEAELATICSAMGERPVHIRQSDNKNYGSLKAELRAIIPELEEMKKRKVERRNQFLEVIEQIQKIKIEIYATNFKTVLDETDLSVRKLEELQAQLQALEKEKSDRINQVLDHLSTLNSLCVVLGMDFNQTIHEIHPGLSETGAKSISDDVIRRLAVAIERLREVKIERMQKIQNLASSLLELWNLMDT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_021706`
TK1151 ID	TkA05G416630
OH-1004 ID	LXL04_021706
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	92.600
Protein coverage (%)	TK1151 88.350 / OH-1004 49.524 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_021706

Location Chr04:135623807-135628468 (+)

Description Similar to MAP65-3: 65-kDa microtubule-associated protein 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g51600`	Microtubule-associated protein that plays a critical role in organizing the mitotic microtubule array during both early and late mitosis in all plant organs.	The plant microtubule-associated protein AtMAP65-3/PLE is essential for cytokinetic phragmoplast function.2004 · DOI: 10.1016/j.cub.2004.02.032 MAP65-3 microtubule-associated protein is essential for nematode-induced giant cell ontogenesis in Arabidopsis.2008 · DOI: 10.1105/tpc.107.057422
`At3g60840`	Microtubule-associated protein involved in mitotic spindle formation.	In vivo dynamics and differential microtubule-binding activities of MAP65 proteins.2004 · DOI: 10.1104/pp.104.051623
`At4g26760`	Microtubule-associated protein that stabilize microtubules (MT).	Arabidopsis microtubule-associated protein AtMAP65-2 acts as a microtubule stabilizer.2009 · DOI: 10.1007/s11103-008-9426-1
`At5g55230`	Microtubule-associated protein that bundle and stabilize adjacent microtubules (MT) of the cell cortex.	In vivo dynamics and differential microtubule-binding activities of MAP65 proteins.2004 · DOI: 10.1104/pp.104.051623 Two microtubule-associated proteins of the Arabidopsis MAP65 family function differently on microtubules.2005 · DOI: 10.1104/pp.104.052456 Dynamic interaction of NtMAP65-1a with microtubules in vivo.2005 · DOI: 10.1242/jcs.02433 Modulated targeting of GFP-AtMAP65-1 to central spindle microtubules during division.2005 · DOI: 10.1111/j.1365-313x.2005.02464.x Control of the AtMAP65-1 interaction with microtubules through the cell cycle.2006 · DOI: 10.1242/jcs.03051 AtMAP65-1 binds to tubulin dimers to promote tubulin assembly.2007 · DOI: 10.5483/bmbrep.2007.40.2.218 Two microtubule-associated proteins of Arabidopsis MAP65s promote antiparallel microtubule bundling.2008 · DOI: 10.1091/mbc.e08-04-0341 Arabidopsis homologs of nucleus- and phragmoplast-localized kinase 2 and 3 and mitogen-activated protein kinase 4 are essential for microtubule organization.2010 · DOI: 10.1105/tpc.109.071746
`At1g14690`	65-kDa microtubule-associated protein 7.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021706 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000226 microtubule cytoskeleton organization Biological Process

GO:0000280 nuclear division Biological Process

GO:0000911 cytokinesis by cell plate formation Biological Process

GO:0001578 microtubule bundle formation Biological Process

GO:0007020 microtubule nucleation Biological Process

GO:0009624 response to nematode Biological Process

GO:0031116 positive regulation of microtubule polymerization Biological Process

GO:0043622 cortical microtubule organization Biological Process

GO:0046785 microtubule polymerization Biological Process

GO:0048528 post-embryonic root development Biological Process

GO:0051301 cell division Biological Process

GO:0052096 formation of syncytium involving giant cell for nutrient acquisition Biological Process

KEGG gene cross-reference

ath:AT1G14690

ath:AT3G60840

ath:AT4G26760

ath:AT5G51600

ath:AT5G55230

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.556

Rank 1 · LXL04_021706 · OH-1004

Nucleus0.472

Rank 2 · LXL04_021706 · OH-1004

Mitochondrion0.043

Rank 3 · LXL04_021706 · OH-1004

Cell membrane0.034

Rank 4 · LXL04_021706 · OH-1004

Endoplasmic reticulum0.025

Rank 5 · LXL04_021706 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03999.18MAP65_ASE118-504 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_021706	`PF03999.18`	MAP65_ASE1	18	504	2.3e-113	380.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FHM4`	Arabidopsis thaliana	65-kDa microtubule-associated protein 3	59.973%	Swiss-Prot	strong database homology
`Q9LZY0`	Arabidopsis thaliana	65-kDa microtubule-associated protein 4	46.404%	Swiss-Prot	moderate database homology
`Q8LEG3`	Arabidopsis thaliana	65-kDa microtubule-associated protein 2	48.691%	Swiss-Prot	moderate database homology
`Q9FLP0`	Arabidopsis thaliana	65-kDa microtubule-associated protein 1	50.652%	Swiss-Prot	strong database homology
`Q8L836`	Arabidopsis thaliana	65-kDa microtubule-associated protein 7	47.940%	Swiss-Prot	moderate database homology

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