Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1107 bp · LXL04_021696|LXL04_021696|OH1004|cDNA
ATGATCAAAGATCAATCATCCATGCCTTCTTTGATGAAACCATTGGTTTTTGATTCTCTGATCTTGCAACATGAATCCAACATACCCGAACAATTTATATGGCCTGATCACGAGAAACCAAACTCGCAAAAAGCCAAGGAACTTACAGTTCCTTCGGTTGACTTACGAGGCTTTCTTTCTGGACGTGCTAGTTCAGCCAAGGAAGCCTCGTTGGTTGTTGGTGAGGCTTGCATGAAACATGGTTTCTTCCTAGTGACCAA...
1107 bp · LXL04_021696|LXL04_021696|OH1004|CDS
ATGATCAAAGATCAATCATCCATGCCTTCTTTGATGAAACCATTGGTTTTTGATTCTCTGATCTTGCAACATGAATCCAACATACCCGAACAATTTATATGGCCTGATCACGAGAAACCAAACTCGCAAAAAGCCAAGGAACTTACAGTTCCTTCGGTTGACTTACGAGGCTTTCTTTCTGGACGTGCTAGTTCAGCCAAGGAAGCCTCGTTGGTTGTTGGTGAGGCTTGCATGAAACATGGTTTCTTCCTAGTGACCAA...
Protein
Download Protein FASTA368 aa · LXL04_021696|LXL04_021696|OH1004|PROTEIN
MIKDQSSMPSLMKPLVFDSLILQHESNIPEQFIWPDHEKPNSQKAKELTVPSVDLRGFLSGRASSAKEASLVVGEACMKHGFFLVTNHGVDASLIADAHRYMDLFFELPLSEKQKVQRKVGESCGYASSFTGRFSSKLPWKETLSFQFSGESNSSNIVEEYFEKKMGKEFTRLGKVYQEYCNAMSKLSLGIMELLGMSLGVDQSHFREFFQENDSIMRLNYYPRCQKPDLTLGTGPHCDPTSLTILHQDSVGGLEVFIEN...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_021696 |
|---|---|
| TK1151 ID | TkA04G143470 |
| OH-1004 ID | LXL04_021696 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 79.200 |
| Protein coverage (%) | TK1151 97.911 / OH-1004 99.728Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_021696 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr04:135441615-135443020 (+) | |||||||||
| Description | Similar to GA20OX1: Gibberellin 20 oxidase 1 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0009416 response to light stimulus Biological Process GO:0009639 response to red or far red light Biological Process GO:0009686 gibberellin biosynthetic process Biological Process GO:0009739 response to gibberellin Biological Process GO:0009740 gibberellic acid mediated signaling pathway Biological Process GO:0048366 leaf development Biological Process GO:0048575 short-day photoperiodism, flowering Biological Process GO:0005737 cytoplasm Cellular Component GO:0045544 gibberellin 20-oxidase activity Molecular Function GO:0046872 metal ion binding Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT4G25420 ath:AT5G51810 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF14226.13DIOX_N50-153 aaPF03171.272OG-FeII_Oxy214-312 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_021696 | PF14226.13 | DIOX_N | 50 | 153 | 2.5e-23 | 83.6 |
| LXL04_021696 | PF03171.27 | 2OG-FeII_Oxy | 214 | 312 | 2.5e-35 | 121.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.