Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1716 bp · LXL04_021658|LXL04_021658|OH1004|cDNA
ATGTGTGTTGGATTCGAACATTGTTATAACTCTTTTTGCATCTTCGCATACCCCATTGGCCCATTATATCACCCTTTTACAGTTTTACTGCTTTCATTCTCCCCCCATTCTGCTCCGCCTACAGAAACGCCGGCCATGGTGTCGCCGCACGGGATCAAACTGGCGGTACATCTCATCTCCACTTACTTCGGCGATATCGTTTCTAAAGTATGCGAATGTCTTCTTCGTAAAGGAACACTAACACTACAGCAAGTGCTACG...
1716 bp · LXL04_021658|LXL04_021658|OH1004|CDS
ATGTGTGTTGGATTCGAACATTGTTATAACTCTTTTTGCATCTTCGCATACCCCATTGGCCCATTATATCACCCTTTTACAGTTTTACTGCTTTCATTCTCCCCCCATTCTGCTCCGCCTACAGAAACGCCGGCCATGGTGTCGCCGCACGGGATCAAACTGGCGGTACATCTCATCTCCACTTACTTCGGCGATATCGTTTCTAAAGTATGCGAATGTCTTCTTCGTAAAGGAACACTAACACTACAGCAAGTGCTACG...
Protein
Download Protein FASTA571 aa · LXL04_021658|LXL04_021658|OH1004|PROTEIN
MCVGFEHCYNSFCIFAYPIGPLYHPFTVLLLSFSPHSAPPTETPAMVSPHGIKLAVHLISTYFGDIVSKVCECLLRKGTLTLQQVLRFTELSKQNVTNALLVLIQHNCVQAFTIEQPGGFEEEKKIVTNYMALHDNIIHHMRFPKFLAIVSDEFGQECTEIFEGLLQHGRLSVNQIMDRYKDKHKPLTSEENSSVVDVVHENFNRLVQARFIERCPAHVPHIKSEEDKDDAAKKKAKKNPSQTLEEQALALATLMESMRF...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_021658 |
|---|---|
| TK1151 ID | TkA05G414350 |
| OH-1004 ID | LXL04_021658 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.600 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 92.119Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_021658 |
|---|---|
| Location | Chr04:134352881-134358445 (-) |
| Description | Similar to POLR3C: DNA-directed RNA polymerase III subunit RPC3 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006351 DNA-templated transcription Biological Process GO:0006359 regulation of transcription by RNA polymerase III Biological Process GO:0006383 transcription by RNA polymerase III Biological Process GO:0006384 transcription initiation at RNA polymerase III promoter Biological Process GO:0006386 termination of RNA polymerase III transcription Biological Process GO:0032728 positive regulation of interferon-beta production Biological Process GO:0045087 innate immune response Biological Process GO:0045089 positive regulation of innate immune response Biological Process GO:0051607 defense response to virus Biological Process GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005666 RNA polymerase III complex Cellular Component |
| KEGG gene cross-reference | bta:507314 hsa:10623 mmu:74414 rno:310685 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF08221.18HTH_953-112 aaPF05645.20RNA_pol_Rpc82201-373 aaPF22536.3WHD_POLR3C417-480 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_021658 | PF08221.18 | HTH_9 | 53 | 112 | 1.6e-25 | 89.7 |
| LXL04_021658 | PF05645.20 | RNA_pol_Rpc82 | 201 | 373 | 2.3e-17 | 64.3 |
| LXL04_021658 | PF22536.3 | WHD_POLR3C | 417 | 480 | 4.4e-13 | 49.7 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.