LXL04_021595 | RubberDandelionOmics

Gene overview

LXL04_021595

Reference: OH-1004 Chr: Chr04 Coordinates: 133048868-133050893 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

888 bp · LXL04_021595|LXL04_021595|OH1004|cDNA

ATGTCATCAGACGATAACCCAGAGATAGTGGAACGAGGTGCCAAGAAGAAcgaaaatgaagaagatgaagagagaACCGGATTTCTAGGGAAGCTAAAGGGATTCGTCCAAGATATTGGGGAAAAAATCGAAGACACAATAGGATTTGGAAAACCTACTGCCGATGTTTCAGCAATTCATATCCCCAAAATCAACCTCAAGCAATGCGATCTGATCGTCGATGTTCTCGTCACAAACCCAAACCCCATTCCAATCCCTCT...

CDS

Download CDS FASTA

888 bp · LXL04_021595|LXL04_021595|OH1004|CDS

ATGTCATCAGACGATAACCCAGAGATAGTGGAACGAGGTGCCAAGAAGAACGAAAATGAAGAAGATGAAGAGAGAACCGGATTTCTAGGGAAGCTAAAGGGATTCGTCCAAGATATTGGGGAAAAAATCGAAGACACAATAGGATTTGGAAAACCTACTGCCGATGTTTCAGCAATTCATATCCCCAAAATCAACCTCAAGCAATGCGATCTGATCGTCGATGTTCTCGTCACAAACCCAAACCCCATTCCAATCCCTCT...

Protein

Download Protein FASTA

295 aa · LXL04_021595|LXL04_021595|OH1004|PROTEIN

MSSDDNPEIVERGAKKNENEEDEERTGFLGKLKGFVQDIGEKIEDTIGFGKPTADVSAIHIPKINLKQCDLIVDVLVTNPNPIPIPLIDIHYLIESDGRKLISGLIPDAGTIHAHGSENVQIPLCLIYDGIKNTNEDIQPVSIIPYKVKVDLIVDVPVFGRITIPLEKNGEIPIPYYQSRFRLKEAEIRTLPKLTEVEIEEVKKEDEAEIAIDSFGKRGLGVKDLVALSGEHTLGFSHCSSSSARLHNFSTAHFSDPSIE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_021595`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_021595

Location Chr04:133048868-133050893 (-)

Description Similar to PER66: Peroxidase 66

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g51890`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At5g42180`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At1g01470`	Probable desiccation-related protein LEA14.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021595 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006950 response to stress Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:0009269 response to desiccation Biological Process

GO:0009611 response to wounding Biological Process

GO:0009644 response to high light intensity Biological Process

GO:0042744 hydrogen peroxide catabolic process Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0004601 peroxidase activity Molecular Function

GO:0020037 heme binding Molecular Function

KEGG gene cross-reference

ath:AT1G01470

ath:AT5G42180

ath:AT5G51890

ghi:107922715

gmx:547837

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.459

Rank 1 · LXL04_021595 · OH-1004

Cytoplasm0.238

Rank 2 · LXL04_021595 · OH-1004

Nucleus0.082

Rank 3 · LXL04_021595 · OH-1004

Lysosome / Vacuole0.077

Rank 4 · LXL04_021595 · OH-1004

Endoplasmic reticulum0.060

Rank 5 · LXL04_021595 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03168.20LEA_275-170 aa

PF00141.29peroxidase203-295 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_021595	`PF03168.20`	LEA_2	75	170	2e-15	57.8
LXL04_021595	`PF00141.29`	peroxidase	203	295	1.9e-17	64.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LT91`	Arabidopsis thaliana	Peroxidase 66	62.353%	Swiss-Prot	weak database homology
`Q43872`	Arabidopsis thaliana	Peroxidase 64	40.146%	Swiss-Prot	weak database homology
`O03983`	Arabidopsis thaliana	Probable desiccation-related protein LEA14	31.169%	Swiss-Prot	moderate database homology

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