LXL04_021568 | RubberDandelionOmics

Gene overview

LXL04_021568

Reference: OH-1004 Chr: Chr04 Coordinates: 132534848-132535970 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

972 bp · LXL04_021568|LXL04_021568|OH1004|cDNA

ATGGCATCTTCATCGCAAGCCCTTTATGCTCCACTGCGTACACTAATTCCGCCTAGTCAACTACCCTCGCGATCTCCGTCGCCATTGATTCCGGTGACCAATCGACCCTTCTCCCTCTCTTCAGCAAAGCCAATTACCAGCATCTCAACAATCGGCGCCACCCACTGCCCCAAAAGATTTAGTCATTTGAAGGCAAAATCATCGATTTCTGCGAACATGGCAACTGAGAAGAAAGTACAAGTATTTGATTCTGAAGAAGC...

CDS

Download CDS FASTA

972 bp · LXL04_021568|LXL04_021568|OH1004|CDS

ATGGCATCTTCATCGCAAGCCCTTTATGCTCCACTGCGTACACTAATTCCGCCTAGTCAACTACCCTCGCGATCTCCGTCGCCATTGATTCCGGTGACCAATCGACCCTTCTCCCTCTCTTCAGCAAAGCCAATTACCAGCATCTCAACAATCGGCGCCACCCACTGCCCCAAAAGATTTAGTCATTTGAAGGCAAAATCATCGATTTCTGCGAACATGGCAACTGAGAAGAAAGTACAAGTATTTGATTCTGAAGAAGC...

Protein

Download Protein FASTA

323 aa · LXL04_021568|LXL04_021568|OH1004|PROTEIN

MASSSQALYAPLRTLIPPSQLPSRSPSPLIPVTNRPFSLSSAKPITSISTIGATHCPKRFSHLKAKSSISANMATEKKVQVFDSEEALSVSLAKYTADLSEKFVKQKGSFTVVVSGGSLIKSLRKLVEAPYIDSIDWSKWHMFWVDERVVPKDHPDSNYLLAFDGFLSKVPIPPGNVYAINDALSAEAAAEDYETCIKHLVHNGIITTSESTQFPKFDLMLLGMGPDGHVASLFPGHYLLQEKNKWVTFIKESPKPPPER...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_021568`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_021568

Location Chr04:132534848-132535970 (+)

Description Similar to PGL3: 6-phosphogluconolactonase 3, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g24400`	Catalyzes the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2Z3C4`	Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate.	No verified direct reference in this release
`Os09g0529100`	Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate.	No verified direct reference in this release
`Os08g0547100`	Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate.	No verified direct reference in this release
`UniProt: A2YXS5`	Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021568 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002229 defense response to oomycetes Biological Process

GO:0005975 carbohydrate metabolic process Biological Process

GO:0006098 pentose-phosphate shunt Biological Process

GO:0009051 pentose-phosphate shunt, oxidative branch Biological Process

GO:0042128 nitrate assimilation Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0071461 cellular response to redox state Biological Process

GO:0005777 peroxisome Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0009570 chloroplast stroma Cellular Component

KEGG gene cross-reference

ath:AT5G24400

dosa:Os08g0547100

dosa:Os09g0529100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.942

Rank 1 · LXL04_021568 · OH-1004

Mitochondrion0.092

Rank 2 · LXL04_021568 · OH-1004

Cytoplasm0.085

Rank 3 · LXL04_021568 · OH-1004

Peroxisome0.037

Rank 4 · LXL04_021568 · OH-1004

Nucleus0.032

Rank 5 · LXL04_021568 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01182.27Glucosamine_iso84-313 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_021568	`PF01182.27`	Glucosamine_iso	84	313	3.9e-73	246.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q84WW2`	Arabidopsis thaliana	6-phosphogluconolactonase 3, chloroplastic	60.000%	Swiss-Prot	strong database homology
`A2Z3C4`	Oryza sativa subsp. indica	Probable 6-phosphogluconolactonase 4, chloroplastic	69.600%	Swiss-Prot	strong database homology
`Q69NG5`	Oryza sativa subsp. japonica	Probable 6-phosphogluconolactonase 4, chloroplastic	69.600%	Swiss-Prot	strong database homology
`Q6Z9C3`	Oryza sativa subsp. japonica	Probable 6-phosphogluconolactonase 3, chloroplastic	65.600%	Swiss-Prot	strong database homology
`A2YXS5`	Oryza sativa subsp. indica	Probable 6-phosphogluconolactonase 3, chloroplastic	65.600%	Swiss-Prot	strong database homology

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