LXL04_021491 | RubberDandelionOmics

Gene overview

LXL04_021491

Reference: OH-1004 Chr: Chr04 Coordinates: 131133454-131136023 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1338 bp · LXL04_021491|LXL04_021491|OH1004|cDNA

ATGGTCGGTGGGAAATGGTGGTGCTTCGGTGATCGTAGCTCCGACGACAATGTCTCTGATCTTGACCCGATACTTCTGGTGAGCGGCGTCGGTGGTACTATTCTGAATTCGAAGCCAAAAGGCTGGTTCGGGCTCACGACCCGTGTTTGGGTCCGAATCCTTCTTGCTGATTTGGAGTTCCGAAAGAGAGCCTGGTCCCTGTATAATCCCGAGACTGGCTACACAGAAGCGTTGGATGATAGTTGTGATATTGTGGTTCC...

CDS

Download CDS FASTA

1338 bp · LXL04_021491|LXL04_021491|OH1004|CDS

ATGGTCGGTGGGAAATGGTGGTGCTTCGGTGATCGTAGCTCCGACGACAATGTCTCTGATCTTGACCCGATACTTCTGGTGAGCGGCGTCGGTGGTACTATTCTGAATTCGAAGCCAAAAGGCTGGTTCGGGCTCACGACCCGTGTTTGGGTCCGAATCCTTCTTGCTGATTTGGAGTTCCGAAAGAGAGCCTGGTCCCTGTATAATCCCGAGACTGGCTACACAGAAGCGTTGGATGATAGTTGTGATATTGTGGTTCC...

Protein

Download Protein FASTA

445 aa · LXL04_021491|LXL04_021491|OH1004|PROTEIN

MVGGKWWCFGDRSSDDNVSDLDPILLVSGVGGTILNSKPKGWFGLTTRVWVRILLADLEFRKRAWSLYNPETGYTEALDDSCDIVVPQDDYGLYAIDILDPSVLVKLLHVTDLYHFHDMIDMLVKCGYKKGTTLFGYGYDFRQSNRIDQSMDDLKEKLETAYKASGGKKVNLISHSMGGLLVSCFISLHSDVFSKYVKKWITIATPFQGAPGYINDTLLTGLQFVDGIESYFFVSRWSMHQLLIECPSIYEMLPNPEFKW...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_021491`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_021491

Location Chr04:131133454-131136023 (+)

Description Similar to LCAT3: Phospholipase A(1) LCAT3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g03310`	Hydrolyzes the sn-1 acylester bond of phospholipids.	Expression in yeast of a novel phospholipase A1 cDNA from Arabidopsis thaliana.2004 · DOI: 10.1111/j.1432-1033.2004.04317.x
`At4g19860`	Lecithin-cholesterol acyltransferase-like 4.	No verified direct reference in this release
`At1g27480`	Lecithin-cholesterol acyltransferase-like 1.	No verified direct reference in this release
`At3g44830`	Putative phospholipid:diacylglycerol acyltransferase 2.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021491 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006071 glycerol metabolic process Biological Process

GO:0006629 lipid metabolic process Biological Process

GO:0006631 fatty acid metabolic process Biological Process

GO:0006650 glycerophospholipid metabolic process Biological Process

GO:0006651 diacylglycerol biosynthetic process Biological Process

GO:0006658 phosphatidylserine metabolic process Biological Process

GO:0006672 ceramide metabolic process Biological Process

GO:0009395 phospholipid catabolic process Biological Process

GO:0016042 lipid catabolic process Biological Process

GO:0034638 phosphatidylcholine catabolic process Biological Process

GO:0046338 phosphatidylethanolamine catabolic process Biological Process

GO:0046470 phosphatidylcholine metabolic process Biological Process

KEGG gene cross-reference

ath:AT1G27480

ath:AT3G03310

ath:AT3G44830

ath:AT4G19860

bta:282271

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.296

Rank 1 · LXL04_021491 · OH-1004

Endoplasmic reticulum0.276

Rank 2 · LXL04_021491 · OH-1004

Cytoplasm0.217

Rank 3 · LXL04_021491 · OH-1004

Golgi apparatus0.130

Rank 4 · LXL04_021491 · OH-1004

Cell membrane0.114

Rank 5 · LXL04_021491 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02450.22LCAT68-390 aa

PF00561.27Abhydrolase_1134-205 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_021491	`PF02450.22`	LCAT	68	390	2.1e-28	100.4
LXL04_021491	`PF00561.27`	Abhydrolase_1	134	205	9.2e-07	29.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q93V61`	Arabidopsis thaliana	Phospholipase A(1) LCAT3	64.545%	Swiss-Prot	strong database homology
`Q71N54`	Arabidopsis thaliana	Lecithin-cholesterol acyltransferase-like 4	52.670%	Swiss-Prot	strong database homology
`Q9FZI8`	Arabidopsis thaliana	Lecithin-cholesterol acyltransferase-like 1	24.107%	Swiss-Prot	weak database homology
`Q9FYC7`	Arabidopsis thaliana	Putative phospholipid:diacylglycerol acyltransferase 2	25.957%	Swiss-Prot	weak database homology

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