LXL04_021487 | RubberDandelionOmics

Gene overview

LXL04_021487

Reference: OH-1004 Chr: Chr04 Coordinates: 131100075-131102097 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1320 bp · LXL04_021487|LXL04_021487|OH1004|cDNA

ATGATTGAAATTTATCATATTTCTAATAACTTTAAATTAACAAATGTAAACAATTTGTTTAATGTTCAGTTACCTGAAGGAGTGGCTCCATTCACACATATCACCCGAAATGAACGCTCAGGCAGAAAGCAGATAaagaaaaaagaagaagaggataTAGCTGTCTGTGAATGCAAATTTGATCCTGGACATACTGAACTTGCATGTGGAGAAAGGTGTTTGAATGTATTAACCAATACAGAATGCACACCTGGATATTG...

CDS

Download CDS FASTA

1320 bp · LXL04_021487|LXL04_021487|OH1004|CDS

ATGATTGAAATTTATCATATTTCTAATAACTTTAAATTAACAAATGTAAACAATTTGTTTAATGTTCAGTTACCTGAAGGAGTGGCTCCATTCACACATATCACCCGAAATGAACGCTCAGGCAGAAAGCAGATAAAGAAAAAAGAAGAAGAGGATATAGCTGTCTGTGAATGCAAATTTGATCCTGGACATACTGAACTTGCATGTGGAGAAAGGTGTTTGAATGTATTAACCAATACAGAATGCACACCTGGATATTG...

Protein

Download Protein FASTA

439 aa · LXL04_021487|LXL04_021487|OH1004|PROTEIN

MIEIYHISNNFKLTNVNNLFNVQLPEGVAPFTHITRNERSGRKQIKKKEEEDIAVCECKFDPGHTELACGERCLNVLTNTECTPGYCPCGTFCKNQRFQKCEYAKTKLFKTEGRGWGLLADENIKAGQFIIEYCGEIISSEEAKARSQTYESQGLRDAYIISLNASYFIDATRKGSLGRFINHSCQPNCETRKWTVLGETRVGIFATKDISIGSELAYDYNFEWYGGVNVRCLCGAPNCSIFLGAKSQGFQEHNHVWEDG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_021487`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_021487

Location Chr04:131100075-131102097 (-)

Description Similar to ASHH1: Histone-lysine N-methyltransferase ASHH1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g76710`	Histone methyltransferase involved in regulation of flowering time.	The trxG family histone methyltransferase SET DOMAIN GROUP 26 promotes flowering via a distinctive genetic pathway.2015 · DOI: 10.1111/tpj.12729

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_021487 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process

GO:0006281 DNA repair Biological Process

GO:0006302 double-strand break repair Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009908 flower development Biological Process

GO:0010224 response to UV-B Biological Process

GO:0010228 vegetative to reproductive phase transition of meristem Biological Process

GO:0032259 methylation Biological Process

GO:0033135 regulation of peptidyl-serine phosphorylation Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0070201 regulation of establishment of protein localization Biological Process

KEGG gene cross-reference

ath:AT1G76710

hsa:64324

hsa:7468

mmu:107823

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.864

Rank 1 · LXL04_021487 · OH-1004

Cytoplasm0.208

Rank 2 · LXL04_021487 · OH-1004

Mitochondrion0.037

Rank 3 · LXL04_021487 · OH-1004

Cell membrane0.029

Rank 4 · LXL04_021487 · OH-1004

Endoplasmic reticulum0.014

Rank 5 · LXL04_021487 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17907.8AWS66-101 aa

PF00856.34SET115-221 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_021487	`PF17907.8`	AWS	66	101	1.1e-12	48.5
LXL04_021487	`PF00856.34`	SET	115	221	1.4e-27	96.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q84WW6`	Arabidopsis thaliana	Histone-lysine N-methyltransferase ASHH1	55.965%	Swiss-Prot	strong database homology

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