LXL04_021454 | RubberDandelionOmics

Gene overview

LXL04_021454

Reference: OH-1004 Chr: Chr04 Coordinates: 130441679-130447567 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3681 bp · LXL04_021454|LXL04_021454|OH1004|cDNA

ATGTCAATACCCAAGGAGCCAGAGCAGGTGATGAAGCAAAGAGATGGATCTGTGCTTGGGAAAAAGACCATTCTTAAGAGCGACCATTTTCCTGGATGTCAGAACAAGCGACTGTCTCCCCAAATTGACGGTGCCCCAAATTATCGCCAGGCAGAATCATTGTGTGTCCATGGTGTTGCGATCCCAACTATTGATGGGATTAGGAATGTTCTTACATATATTGGGGCTCAAGTTGATGGAAAGCAAGCAAATGTTCTTTG...

CDS

Download CDS FASTA

3681 bp · LXL04_021454|LXL04_021454|OH1004|CDS

ATGTCAATACCCAAGGAGCCAGAGCAGGTGATGAAGCAAAGAGATGGATCTGTGCTTGGGAAAAAGACCATTCTTAAGAGCGACCATTTTCCTGGATGTCAGAACAAGCGACTGTCTCCCCAAATTGACGGTGCCCCAAATTATCGCCAGGCAGAATCATTGTGTGTCCATGGTGTTGCGATCCCAACTATTGATGGGATTAGGAATGTTCTTACATATATTGGGGCTCAAGTTGATGGAAAGCAAGCAAATGTTCTTTG...

Protein

Download Protein FASTA

1226 aa · LXL04_021454|LXL04_021454|OH1004|PROTEIN

MSIPKEPEQVMKQRDGSVLGKKTILKSDHFPGCQNKRLSPQIDGAPNYRQAESLCVHGVAIPTIDGIRNVLTYIGAQVDGKQANVLWINLREEPVVYINGRPFVLREVERPFSNLEYTGINRARVEQMEDRLKEDILLEASRYGNKILVTDELPDGQMVDQWEPVTPDSIKTPLQVYLELQTQKFLVDYERIPVTDEKSPKEQDFDTLVDRISTADLKTEIIFNCQMGRGRTTTGMVIATLIYFNRIGASGIPKTTSIGK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_021454`
TK1151 ID	TkA05G397000
OH-1004 ID	LXL04_021454
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`LXL04_021454`
Location	Chr04:130441679-130447567 (+)
Description	Similar to PALD1: Paladin
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_021454` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0004725 protein tyrosine phosphatase activity Molecular Function
KEGG gene cross-reference	gga:373898 hsa:27143 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.637

Rank 1 · LXL04_021454 · OH-1004

Nucleus0.241

Rank 2 · LXL04_021454 · OH-1004

Cell membrane0.123

Rank 3 · LXL04_021454 · OH-1004

Mitochondrion0.120

Rank 4 · LXL04_021454 · OH-1004

Golgi apparatus0.069

Rank 5 · LXL04_021454 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14566.12PTPlike_phytase88-242 aa

PF22785.2Tc-R-P160-241 aa

PF14566.12PTPlike_phytase504-660 aa

PF22785.2Tc-R-P584-659 aa

PF14566.12PTPlike_phytase932-1084 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_021454	`PF14566.12`	PTPlike_phytase	88	242	2.4e-151	499.6
LXL04_021454	`PF22785.2`	Tc-R-P	160	241	6.5e-13	49.9
LXL04_021454	`PF14566.12`	PTPlike_phytase	504	660	2.4e-151	499.6
LXL04_021454	`PF22785.2`	Tc-R-P	584	659	6.5e-13	49.9
LXL04_021454	`PF14566.12`	PTPlike_phytase	932	1084	2.4e-151	499.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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