LXL04_021150 | RubberDandelionOmics

Gene overview

LXL04_021150

Reference: OH-1004 Chr: Chr04 Coordinates: 122782873-122785515 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1509 bp · LXL04_021150|LXL04_021150|OH1004|cDNA

atgaacaaaaaaaaagtaCACGAGATCGAACATCAGTTGGGTGAAGAAAACGAGATGATCAAAGCCGCCATTGATGAACTGAAGAATTTGCAGAAAGTGAAGGAAGCTTCGACTGCATTGAAGGTGTGGCAACCGGCGATTGTTCATGGAAGGCAAAGGGAGATCGTTGAAAATTGTAGTGTACCGGTTGATTCGAGGATTAATGTGTTGGAGATGGAGATTAAGCTTTGTCGACAACAGATATTTGGGTTTTTGAAGTC...

CDS

Download CDS FASTA

1509 bp · LXL04_021150|LXL04_021150|OH1004|CDS

ATGAACAAAAAAAAAGTACACGAGATCGAACATCAGTTGGGTGAAGAAAACGAGATGATCAAAGCCGCCATTGATGAACTGAAGAATTTGCAGAAAGTGAAGGAAGCTTCGACTGCATTGAAGGTGTGGCAACCGGCGATTGTTCATGGAAGGCAAAGGGAGATCGTTGAAAATTGTAGTGTACCGGTTGATTCGAGGATTAATGTGTTGGAGATGGAGATTAAGCTTTGTCGACAACAGATATTTGGGTTTTTGAAGTC...

Protein

Download Protein FASTA

502 aa · LXL04_021150|LXL04_021150|OH1004|PROTEIN

MNKKKVHEIEHQLGEENEMIKAAIDELKNLQKVKEASTALKVWQPAIVHGRQREIVENCSVPVDSRINVLEMEIKLCRQQIFGFLKSRRDENGRLEAVKEKLSKKKRFETVEGKGGFPSKEKPQTNTKMEEEDEGPPLAVEINETLDSQSFNQSLQKHENLDELPPVGVTVITGYLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGAVVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHIL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_021150`
TK1151 ID	TkA05G357910
OH-1004 ID	LXL04_021150
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	97.400
Protein coverage (%)	TK1151 100.000 / OH-1004 74.502 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_021150`
Location	Chr04:122782873-122785515 (+)
Description	Similar to Cbwd1: COBW domain-containing protein 1
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_021150` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0006882 intracellular zinc ion homeostasis Biological Process GO:0051604 protein maturation Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0003924 GTPase activity Molecular Function GO:0005525 GTP binding Molecular Function GO:0008270 zinc ion binding Molecular Function GO:0016787 hydrolase activity Molecular Function GO:0140827 zinc chaperone activity Molecular Function
KEGG gene cross-reference	hsa:150472 hsa:55871 mmu:226043 rno:171057 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.555

Rank 1 · LXL04_021150 · OH-1004

Nucleus0.352

Rank 2 · LXL04_021150 · OH-1004

Golgi apparatus0.083

Rank 3 · LXL04_021150 · OH-1004

Mitochondrion0.080

Rank 4 · LXL04_021150 · OH-1004

Endoplasmic reticulum0.075

Rank 5 · LXL04_021150 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF28649.1SKIP24_C3-103 aa

PF02492.26cobW169-356 aa

PF07683.20CobW_C403-497 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_021150	`PF28649.1`	SKIP24_C	3	103	4.1e-36	124.1
LXL04_021150	`PF02492.26`	cobW	169	356	8.2e-57	192.5
LXL04_021150	`PF07683.20`	CobW_C	403	497	1.4e-17	64.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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