LXL04_021139 | RubberDandelionOmics

Gene overview

LXL04_021139

Reference: OH-1004 Chr: Chr04 Coordinates: 122221903-122227920 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3060 bp · LXL04_021139|LXL04_021139|OH1004|cDNA

ATGTTTGTTCTGTTGAAGACGAAGAACAGAAGACGACGAAAACAAAACACCACTTGTGTCATATCTTTCCTTCTCTTCAATGACGGTGATTTATCTCCATTCATCCTCTCTCTATCTATCTGCCTGATATCAGTACTGCCAGAGCGAGAGAGTGCAGAGAGAACAACAATGGCGGCTTCGTCTTTCTCTGCCACGAGCTACATTTCAAAATCGAGTATAGCGGATTCCAGTTTCAACGCCGAACACTCCAAAAGTCTGTT...

CDS

Download CDS FASTA

3060 bp · LXL04_021139|LXL04_021139|OH1004|CDS

ATGTTTGTTCTGTTGAAGACGAAGAACAGAAGACGACGAAAACAAAACACCACTTGTGTCATATCTTTCCTTCTCTTCAATGACGGTGATTTATCTCCATTCATCCTCTCTCTATCTATCTGCCTGATATCAGTACTGCCAGAGCGAGAGAGTGCAGAGAGAACAACAATGGCGGCTTCGTCTTTCTCTGCCACGAGCTACATTTCAAAATCGAGTATAGCGGATTCCAGTTTCAACGCCGAACACTCCAAAAGTCTGTT...

Protein

Download Protein FASTA

1019 aa · LXL04_021139|LXL04_021139|OH1004|PROTEIN

MFVLLKTKNRRRRKQNTTCVISFLLFNDGDLSPFILSLSICLISVLPERESAERTTMAASSFSATSYISKSSIADSSFNAEHSKSLLLLKFKLNTRLRSRGKNFAVTNVASRNQQLQKLQDQSDQEEATDALNNGILVPDSESVTSSIKYHAEFTPSFSPENFELPKAYYATAESVRDMLITNWNATYNFHEKMNVKQAYYLSMEFLQGRALLNAIGNLELFGAYADALRKLGHDLEDVAKQEPDAALGNGGLGRLASCF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_021139`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_021139

Location Chr04:122221903-122227920 (+)

Description Similar to STP-1: Alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g29320`	Phosphorylase is an important allosteric enzyme in carbohydrate metabolism.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_021139 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005980 glycogen catabolic process Biological Process

GO:0009266 response to temperature stimulus Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009501 amyloplast Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0004645 1,4-alpha-oligoglucan phosphorylase activity Molecular Function

GO:0008184 glycogen phosphorylase activity Molecular Function

GO:0030170 pyridoxal phosphate binding Molecular Function

KEGG gene cross-reference

ath:AT3G29320

sot:102596766

sot:102603391

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.513

Rank 1 · LXL04_021139 · OH-1004

Cytoplasm0.142

Rank 2 · LXL04_021139 · OH-1004

Endoplasmic reticulum0.132

Rank 3 · LXL04_021139 · OH-1004

Cell membrane0.108

Rank 4 · LXL04_021139 · OH-1004

Golgi apparatus0.074

Rank 5 · LXL04_021139 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00343.27Phosphorylase230-551 aa

PF00343.27Phosphorylase566-1013 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_021139	`PF00343.27`	Phosphorylase	230	551	3.3e-293	975.1
LXL04_021139	`PF00343.27`	Phosphorylase	566	1013	3.3e-293	975.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LIB2`	Arabidopsis thaliana	Alpha-glucan phosphorylase 1	73.772%	Swiss-Prot	strong database homology

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