LXL04_021079 | RubberDandelionOmics

Gene overview

LXL04_021079

Reference: OH-1004 Chr: Chr04 Coordinates: 120986669-120988228 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1024 bp · LXL04_021079|LXL04_021079|OH1004|cDNA

ATGGCAAAATCAGGTCGGAGTAGTgagaagaagaaaaaacaaaataacaaTGGTAATATGGCGGCGTTAGGAGTTGGGGTGAAGAAAGGGCCATGGACGGCTGAAGAAGACCGGAAGCTATTGGCCTACATCCAACAATTTGGCCATGGTAGTTGGCGATCTTTGCCTGCAAAAGCTGGGCTTAAGAGATGTGGAAAGAGTTGCCGGTTAAGATGGACAAATTACCTTCGACCGGATATCAAGAGAGGAAAGTTCAGTTT...

CDS

Download CDS FASTA

1008 bp · LXL04_021079|LXL04_021079|OH1004|CDS

ATGGCAAAATCAGGTCGGAGTAGTGAGAAGAAGAAAAAACAAAATAACAATGGTAATATGGCGGCGTTAGGAGTTGGGGTGAAGAAAGGGCCATGGACGGCTGAAGAAGACCGGAAGCTATTGGCCTACATCCAACAATTTGGCCATGGTAGTTGGCGATCTTTGCCTGCAAAAGCTGGGCTTAAGAGATGTGGAAAGAGTTGCCGGTTAAGATGGACAAATTACCTTCGACCGGATATCAAGAGAGGAAAGTTCAGTTT...

Protein

Download Protein FASTA

335 aa · LXL04_021079|LXL04_021079|OH1004|PROTEIN

MAKSGRSSEKKKKQNNNGNMAALGVGVKKGPWTAEEDRKLLAYIQQFGHGSWRSLPAKAGLKRCGKSCRLRWTNYLRPDIKRGKFSLEEERTIIQLHALLGNRWSTIAAHLPRRTDNEIKNHWNSHIKKRMTKMGIDPMTHKPKSGTQLLGSNVNHMAQWEAARLEAEARLVQKPRNNYSNQQPYNLLSPSSIHEVHKTPTTLPPPYLPCLDVLKVWQGTLWSNYSINNESLQSLISTSNVSKKNSTATSADQLRNNDPC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_021079`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_021079

Location Chr04:120986669-120988228 (-)

Description Similar to MYB16: Transcription factor MYB16

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g15310`	Involved in the control of epidermal cell morphogenesis in petals.	Control of cell and petal morphogenesis by R2R3 MYB transcription factors.2007 · DOI: 10.1242/dev.02836 MIXTA-like transcription factors and WAX INDUCER1/SHINE1 coordinately regulate cuticle development in Arabidopsis and Torenia fournieri.2013 · DOI: 10.1105/tpc.113.110783 The MIXTA-like transcription factor MYB16 is a major regulator of cuticle formation in vegetative organs.2013 · DOI: 10.4161/psb.26826
`At3g01140`	Functions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation.	Transcriptional profiling of mature Arabidopsis trichomes reveals that NOECK encodes the MIXTA-like transcriptional regulator MYB106.2008 · DOI: 10.1104/pp.108.126979 MIXTA-like transcription factors and WAX INDUCER1/SHINE1 coordinately regulate cuticle development in Arabidopsis and Torenia fournieri.2013 · DOI: 10.1105/tpc.113.110783 The MIXTA-like transcription factor MYB16 is a major regulator of cuticle formation in vegetative organs.2013 · DOI: 10.4161/psb.26826
`At3g61250`	Transcription factor that may play a role in flower development by repressing ANT.	Characterization of Arabidopsis MYB transcription factor gene AtMYB17 and its possible regulation by LEAFY and AGL15.2009 · DOI: 10.1016/s1673-8527(08)60096-x LATE MERISTEM IDENTITY2 acts together with LEAFY to activate APETALA1.2011 · DOI: 10.1242/dev.063073
`At4g21440`	Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable).	Integration of wounding and osmotic stress signals determines the expression of the AtMYB102 transcription factor gene.2003 · DOI: 10.1104/pp.102.019273 The Arabidopsis thaliana Transcription Factor AtMYB102 Functions in Defense Against the Insect Herbivore Pieris rapae.2006 · DOI: 10.4161/psb.1.6.3512
`At4g28110`	Transcription factor involved in salt stress response.	AtMyb41 regulates transcriptional and metabolic responses to osmotic stress in Arabidopsis.2009 · DOI: 10.1104/pp.108.134874 Phosphorylation by AtMPK6 is required for the biological function of AtMYB41 in Arabidopsis.2012 · DOI: 10.1016/j.bbrc.2012.04.137 AtMYB41 activates ectopic suberin synthesis and assembly in multiple plant species and cell types.2014 · DOI: 10.1111/tpj.12624

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021079 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000902 cell morphogenesis Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006952 defense response Biological Process

GO:0006970 response to osmotic stress Biological Process

GO:0009611 response to wounding Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009825 multidimensional cell growth Biological Process

GO:0009908 flower development Biological Process

GO:0009909 regulation of flower development Biological Process

GO:0010091 trichome branching Biological Process

GO:0010143 cutin biosynthetic process Biological Process

KEGG gene cross-reference

ath:AT3G01140

ath:AT3G61250

ath:AT4G21440

ath:AT4G28110

ath:AT5G15310

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.932

Rank 1 · LXL04_021079 · OH-1004

Cytoplasm0.143

Rank 2 · LXL04_021079 · OH-1004

Cell membrane0.025

Rank 3 · LXL04_021079 · OH-1004

Mitochondrion0.015

Rank 4 · LXL04_021079 · OH-1004

Endoplasmic reticulum0.012

Rank 5 · LXL04_021079 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00249.38Myb_DNA-binding29-76 aa

PF13921.13Myb_DNA-bind_632-91 aa

PF00249.38Myb_DNA-binding82-126 aa

PF13921.13Myb_DNA-bind_685-132 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_021079	`PF00249.38`	Myb_DNA-binding	29	76	2.5e-35	121.0
LXL04_021079	`PF13921.13`	Myb_DNA-bind_6	32	91	2.1e-23	82.9
LXL04_021079	`PF00249.38`	Myb_DNA-binding	82	126	2.5e-35	121.0
LXL04_021079	`PF13921.13`	Myb_DNA-bind_6	85	132	2.1e-23	82.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LXF1`	Arabidopsis thaliana	Transcription factor MYB16	68.333%	Swiss-Prot	moderate database homology
`Q9LE63`	Arabidopsis thaliana	Transcription factor MYB106	71.069%	Swiss-Prot	weak database homology
`Q9M2D9`	Arabidopsis thaliana	Transcription factor MYB17	50.427%	Swiss-Prot	moderate database homology
`Q9LDR8`	Arabidopsis thaliana	Transcription factor MYB102	73.109%	Swiss-Prot	weak database homology
`Q9M0J5`	Arabidopsis thaliana	Transcription factor MYB41	73.950%	Swiss-Prot	weak database homology

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