Gene Card
Gene overview
cDNA / CDS / Protein Sequences
693 bp · LXL04_021053|LXL04_021053|OH1004|cDNA
ATGAAGATGCAATCTAACATTGCTTCGCTCTTGATCAAGCTCTTAACGGTGCATTCACTACTCCTACTCTCTGCTTCACAAGACTTCGATTTCTTCTACTTTGTTCAACAGTGGCCAGGATCGTACTGTGACACGAAACAAGGTTGTTGCTATCCAAGCACGGGTAAACCGGCATCCGACTTTGGAATCCATGGGCTTTGGCCTAACAGAAATGATGGATCCTATCCTTCCAATTGCGACTCTAGCAGCCCTTTTGATGC...
693 bp · LXL04_021053|LXL04_021053|OH1004|CDS
ATGAAGATGCAATCTAACATTGCTTCGCTCTTGATCAAGCTCTTAACGGTGCATTCACTACTCCTACTCTCTGCTTCACAAGACTTCGATTTCTTCTACTTTGTTCAACAGTGGCCAGGATCGTACTGTGACACGAAACAAGGTTGTTGCTATCCAAGCACGGGTAAACCGGCATCCGACTTTGGAATCCATGGGCTTTGGCCTAACAGAAATGATGGATCCTATCCTTCCAATTGCGACTCTAGCAGCCCTTTTGATGC...
Protein
Download Protein FASTA230 aa · LXL04_021053|LXL04_021053|OH1004|PROTEIN
MKMQSNIASLLIKLLTVHSLLLLSASQDFDFFYFVQQWPGSYCDTKQGCCYPSTGKPASDFGIHGLWPNRNDGSYPSNCDSSSPFDASKISDLTNRMRSEWPTLSCPSNNGLTFWGHEWDKHGTCSESVLNQHAYFATALTLKNEINILQALQSAGIQPNGQKYSLTSIKGAIKGASGYTPWIECNNDSSSGSSQLYQVYFCVDSSASSFIECPVFPNGSCASSVEFPSF
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_021053 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_021053 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr04:119989835-119991073 (+) | |||||||||
| Description | Similar to Extracellular ribonuclease LE | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006401 RNA catabolic process Biological Process GO:0009611 response to wounding Biological Process GO:0009718 anthocyanin-containing compound biosynthetic process Biological Process GO:0016036 cellular response to phosphate starvation Biological Process GO:0005576 extracellular region Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005764 lysosome Cellular Component GO:0009505 plant-type cell wall Cellular Component GO:0003723 RNA binding Molecular Function GO:0004521 RNA endonuclease activity Molecular Function GO:0004540 RNA nuclease activity Molecular Function GO:0016787 hydrolase activity Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT1G26820 ath:AT2G02990 ddi:DDB_G0281293 sly:544098 sly:544193 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00445.24Ribonuclease_T229-213 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_021053 | PF00445.24 | Ribonuclease_T2 | 29 | 213 | 2.3e-63 | 214.4 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.