LXL04_021049 | RubberDandelionOmics

Gene overview

LXL04_021049

Reference: OH-1004 Chr: Chr04 Coordinates: 119848334-119849356 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

363 bp · LXL04_021049|LXL04_021049|OH1004|cDNA

ATGGTGCAACGTCTCACCTACCGGAAACGCCATAGCTATGCTACCAAATCCAACCAGCACAGGGTTGTCAAAACCCCAGGTGGCAAACTAGTTTATCAGACCACTAAAAAGAGGGCAAGTGGACCTAAATGTCCTGTTACTGGCAAAAGAATTCAAGGGATTCCACATTTGAGGCCTACTGAATACAAGAGGTCAAGATTATCCAGGAACAGAAGAACAGTTAACCGTGCTTATGGTGGTGTGCTGTCTGCTGGAGCAGT...

CDS

Download CDS FASTA

363 bp · LXL04_021049|LXL04_021049|OH1004|CDS

ATGGTGCAACGTCTCACCTACCGGAAACGCCATAGCTATGCTACCAAATCCAACCAGCACAGGGTTGTCAAAACCCCAGGTGGCAAACTAGTTTATCAGACCACTAAAAAGAGGGCAAGTGGACCTAAATGTCCTGTTACTGGCAAAAGAATTCAAGGGATTCCACATTTGAGGCCTACTGAATACAAGAGGTCAAGATTATCCAGGAACAGAAGAACAGTTAACCGTGCTTATGGTGGTGTGCTGTCTGCTGGAGCAGT...

Protein

Download Protein FASTA

120 aa · LXL04_021049|LXL04_021049|OH1004|PROTEIN

MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPTEYKRSRLSRNRRTVNRAYGGVLSAGAVRERIIRAFLVEEQKIVKKVLKIQKTKEKTANKS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_021049`
TK1151 ID	TkA05G345800
OH-1004 ID	LXL04_021049
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_021049

Location Chr04:119848334-119849356 (-)

Description Similar to RPL34: 60S ribosomal protein L34

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g26880`	Large ribosomal subunit protein eL34z.	No verified direct reference in this release
`At1g69620`	Large ribosomal subunit protein eL34y.	No verified direct reference in this release
`At3g28900`	Large ribosomal subunit protein eL34x.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021049 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006412 translation Biological Process

GO:0042254 ribosome biogenesis Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005840 ribosome Cellular Component

GO:0022625 cytosolic large ribosomal subunit Cellular Component

GO:0022626 cytosolic ribosome Cellular Component

GO:1990904 ribonucleoprotein complex Cellular Component

KEGG gene cross-reference

ath:AT1G26880

ath:AT1G69620

ath:AT3G28900

nta:107763405

nta:107779746

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.855

Rank 1 · LXL04_021049 · OH-1004

Nucleus0.205

Rank 2 · LXL04_021049 · OH-1004

Endoplasmic reticulum0.157

Rank 3 · LXL04_021049 · OH-1004

Plastid0.034

Rank 4 · LXL04_021049 · OH-1004

Mitochondrion0.022

Rank 5 · LXL04_021049 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01199.24Ribosomal_L34e1-96 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_021049	`PF01199.24`	Ribosomal_L34e	1	96	1.9e-38	131.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q42351`	Arabidopsis thaliana	Large ribosomal subunit protein eL34z	90.833%	Swiss-Prot	strong database homology
`Q9FE65`	Arabidopsis thaliana	Large ribosomal subunit protein eL34y	91.597%	Swiss-Prot	strong database homology
`Q9LJW6`	Arabidopsis thaliana	Large ribosomal subunit protein eL34x	88.333%	Swiss-Prot	strong database homology

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