LXL04_021040 | RubberDandelionOmics

Gene overview

LXL04_021040

Reference: OH-1004 Chr: Chr04 Coordinates: 119653591-119655355 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1326 bp · LXL04_021040|LXL04_021040|OH1004|cDNA

ATGGAAGAGAGAAGTGAGAACGGAGATAAAATAGAGGAAATCATGTTGCCTGGTTTTCGGTTTCATCCAACAGACGAAGAGCTTGTTGGGTTTTATCTAAAGAGGAAGATCCAACAAAGGCCACTCTCCATCGAACTCATCAAGCAATTAGATATCTATAAACATGATCCATGGGATCTTCCAAAGTTGGCTATGACGGGAGAGAAAGAATGGTACTTTTACTGTCCAAGGGACAGAAAGTACCGAAACAGTGCACGGCC...

CDS

Download CDS FASTA

1326 bp · LXL04_021040|LXL04_021040|OH1004|CDS

ATGGAAGAGAGAAGTGAGAACGGAGATAAAATAGAGGAAATCATGTTGCCTGGTTTTCGGTTTCATCCAACAGACGAAGAGCTTGTTGGGTTTTATCTAAAGAGGAAGATCCAACAAAGGCCACTCTCCATCGAACTCATCAAGCAATTAGATATCTATAAACATGATCCATGGGATCTTCCAAAGTTGGCTATGACGGGAGAGAAAGAATGGTACTTTTACTGTCCAAGGGACAGAAAGTACCGAAACAGTGCACGGCC...

Protein

Download Protein FASTA

441 aa · LXL04_021040|LXL04_021040|OH1004|PROTEIN

MEERSENGDKIEEIMLPGFRFHPTDEELVGFYLKRKIQQRPLSIELIKQLDIYKHDPWDLPKLAMTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYASEGSKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRLPSLTDHTAPSKRFLEKTIPANMWILKKSSFNLLLDQETVGYRDSWAICRIFKKASSTAQRTLSHSWVSPIFPETPSSDRNIHGISSNDLQHSSITSFSPNIDHTGSNNTSLYKPFNIN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_021040`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_021040

Location Chr04:119653591-119655355 (+)

Description Similar to FEZ: Protein FEZ

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g26870`	Promotes periclinal root capforming cell divisions.	No verified direct reference in this release
`At5g39820`	Putative NAC domain-containing protein 94.	No verified direct reference in this release
`At2g43000`	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence.	JUNGBRUNNEN1, a reactive oxygen species-responsive NAC transcription factor, regulates longevity in Arabidopsis.2012 · DOI: 10.1105/tpc.111.090894
`At3g15510`	Transcription factor of the NAC family (Probable).	NAC family proteins NARS1/NAC2 and NARS2/NAM in the outer integument regulate embryogenesis in Arabidopsis.2008 · DOI: 10.1105/tpc.108.060160
`At2g02450`	Transcription factor that acts as a floral repressor.	Control of flowering time and cold response by a NAC-domain protein in Arabidopsis.2007 · DOI: 10.1371/journal.pone.0000642

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021040 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005992 trehalose biosynthetic process Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0009718 anthocyanin-containing compound biosynthetic process Biological Process

GO:0009733 response to auxin Biological Process

GO:0009753 response to jasmonic acid Biological Process

GO:0009908 flower development Biological Process

GO:0010120 camalexin biosynthetic process Biological Process

GO:0010150 leaf senescence Biological Process

GO:0042538 hyperosmotic salinity response Biological Process

GO:0045770 positive regulation of asymmetric cell division Biological Process

GO:0045995 regulation of embryonic development Biological Process

GO:0048103 somatic stem cell division Biological Process

KEGG gene cross-reference

ath:AT1G26870

ath:AT2G02450

ath:AT2G43000

ath:AT3G15510

ath:AT5G39820

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.961

Rank 1 · LXL04_021040 · OH-1004

Cytoplasm0.090

Rank 2 · LXL04_021040 · OH-1004

Cell membrane0.040

Rank 3 · LXL04_021040 · OH-1004

Endoplasmic reticulum0.032

Rank 4 · LXL04_021040 · OH-1004

Plastid0.017

Rank 5 · LXL04_021040 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02365.21NAM17-142 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_021040	`PF02365.21`	NAM	17	142	9.8e-48	162.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9ZVH0`	Arabidopsis thaliana	Protein FEZ	48.166%	Swiss-Prot	moderate database homology
`Q9FIW5`	Arabidopsis thaliana	Putative NAC domain-containing protein 94	59.459%	Swiss-Prot	moderate database homology
`Q9SK55`	Arabidopsis thaliana	Transcription factor JUNGBRUNNEN 1	47.368%	Swiss-Prot	moderate database homology
`Q9LD44`	Arabidopsis thaliana	NAC transcription factor 56	47.291%	Swiss-Prot	weak database homology
`Q9ZVP8`	Arabidopsis thaliana	NAC domain-containing protein 35	63.077%	Swiss-Prot	weak database homology

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