LXL04_021021 | RubberDandelionOmics

Gene overview

LXL04_021021

Reference: OH-1004 Chr: Chr04 Coordinates: 119213361-119214840 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

654 bp · LXL04_021021|LXL04_021021|OH1004|cDNA

ATGTGCCGGAGTTGGAATCGGAGGCCGGAGGTGGGATCGGCGTTCTCCTCCTTCTCTGATTTGCCATCTGAAACCATTCCCCTCTCCTCCTCCTTCCCTGTTCGTGTCAAAATCGACCGCACAGAGAAATCCAGCACCGTCGAGCAAAGGCGAGATCTGTGGGTTCCGACGGACAAGATCCACCACCGTGTTCTCTCCTCTAAATCGCCGAAGCAGGAAGCCACGAAACTAGGTGGTGCTACTGCTGAAATAATGTCTGA...

CDS

Download CDS FASTA

654 bp · LXL04_021021|LXL04_021021|OH1004|CDS

ATGTGCCGGAGTTGGAATCGGAGGCCGGAGGTGGGATCGGCGTTCTCCTCCTTCTCTGATTTGCCATCTGAAACCATTCCCCTCTCCTCCTCCTTCCCTGTTCGTGTCAAAATCGACCGCACAGAGAAATCCAGCACCGTCGAGCAAAGGCGAGATCTGTGGGTTCCGACGGACAAGATCCACCACCGTGTTCTCTCCTCTAAATCGCCGAAGCAGGAAGCCACGAAACTAGGTGGTGCTACTGCTGAAATAATGTCTGA...

Protein

Download Protein FASTA

217 aa · LXL04_021021|LXL04_021021|OH1004|PROTEIN

MCRSWNRRPEVGSAFSSFSDLPSETIPLSSSFPVRVKIDRTEKSSTVEQRRDLWVPTDKIHHRVLSSKSPKQEATKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTREDRRKLYSSFGLLYPYGHEELAVCEDIDQVRGVMEKYPAYQHIFGKLSYGESQMLDKAFYEEEVKRLCLYFEQQFHYGVFFAYMRLREQEIRNLMWISECGSKSEI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_021021`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_021021

Location Chr04:119213361-119214840 (+)

Description Similar to VHA-d1: V-type proton ATPase subunit d1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g28710`	Subunit of the integral membrane V0 complex of vacuolar ATPase.	No verified direct reference in this release
`At3g28715`	Subunit of the integral membrane V0 complex of vacuolar ATPase.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0587000`	Subunit of the integral membrane V0 complex of vacuolar ATPase.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021021 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007034 vacuolar transport Biological Process

GO:0007035 vacuolar acidification Biological Process

GO:0016241 regulation of macroautophagy Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005765 lysosomal membrane Cellular Component

GO:0005769 early endosome Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005774 vacuolar membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

KEGG gene cross-reference

ath:AT3G28710

ath:AT3G28715

ddi:DDB_G0273071

ddi:DDB_G0273657

dosa:Os01g0587000

hsa:245972

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.409

Rank 1 · LXL04_021021 · OH-1004

Nucleus0.244

Rank 2 · LXL04_021021 · OH-1004

Mitochondrion0.226

Rank 3 · LXL04_021021 · OH-1004

Peroxisome0.066

Rank 4 · LXL04_021021 · OH-1004

Plastid0.064

Rank 5 · LXL04_021021 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01992.22vATP-synt_AC3974-211 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_021021	`PF01992.22`	vATP-synt_AC39	74	211	9.1e-37	127.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LJI5`	Arabidopsis thaliana	V-type proton ATPase subunit d1	89.362%	Swiss-Prot	moderate database homology
`Q9LHA4`	Arabidopsis thaliana	V-type proton ATPase subunit d2	89.362%	Swiss-Prot	moderate database homology
`Q8RU33`	Oryza sativa subsp. japonica	Probable V-type proton ATPase subunit d	87.234%	Swiss-Prot	moderate database homology

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