LXL04_020952 | RubberDandelionOmics

Gene overview

LXL04_020952

Reference: OH-1004 Chr: Chr04 Coordinates: 116266808-116268533 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1323 bp · LXL04_020952|LXL04_020952|OH1004|cDNA

ATGAACCTTTCTCTCATAATCATCATCACTCTTCTTGTTATTCCCCCATCTTATTCAAAAGTCCTTAATGGAGACGACAATAATCAAACGATCTCCTTAAACCCCTTTCTGGATCATCGAAATTTTTCACTGAAAGATTATATCCTAGAGCTGGCAAATCATGCTGAAACTGCACACTGGATCACAAAAATTAGAAGGGAGATTCATGAATACCCTGAACTTGCTTTCGAAGAAATTCGTACAAGCTCCATTATCCGGCG...

CDS

Download CDS FASTA

1323 bp · LXL04_020952|LXL04_020952|OH1004|CDS

ATGAACCTTTCTCTCATAATCATCATCACTCTTCTTGTTATTCCCCCATCTTATTCAAAAGTCCTTAATGGAGACGACAATAATCAAACGATCTCCTTAAACCCCTTTCTGGATCATCGAAATTTTTCACTGAAAGATTATATCCTAGAGCTGGCAAATCATGCTGAAACTGCACACTGGATCACAAAAATTAGAAGGGAGATTCATGAATACCCTGAACTTGCTTTCGAAGAAATTCGTACAAGCTCCATTATCCGGCG...

Protein

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440 aa · LXL04_020952|LXL04_020952|OH1004|PROTEIN

MNLSLIIIITLLVIPPSYSKVLNGDDNNQTISLNPFLDHRNFSLKDYILELANHAETAHWITKIRREIHEYPELAFEEIRTSSIIRRELKKMSIEYQWPVAKTGVVAIVGTGLPPFVALRADMDALPIQELVDWEHKSKIDGKMHACGHDAHVAMLLGAAKILKHLENEIRGTVVLIFQPAEEQGEGAKHMIKEGVLDNVEAIFGLHLVLSSDSGVVASRSGEFLAGCGWFRAVIYGKGGHAAIPQDSVDPVLAASASII...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_020952`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_020952

Location Chr04:116266808-116268533 (+)

Description Similar to ILL4: IAA-amino acid hydrolase ILR1-like 4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g51760`	May hydrolyze auxin-amino acid conjugates.	IAR3 encodes an auxin conjugate hydrolase from Arabidopsis.1999 · DOI: 10.1105/tpc.11.3.365 Characterization of a family of IAA-amino acid conjugate hydrolases from Arabidopsis.2002 · DOI: 10.1074/jbc.m111955200 A family of auxin-conjugate hydrolases that contributes to free indole-3-acetic acid levels during Arabidopsis germination.2004 · DOI: 10.1104/pp.104.039677 The amidohydrolases IAR3 and ILL6 contribute to jasmonoyl-isoleucine hormone turnover and generate 12-hydroxyjasmonic acid upon wounding in Arabidopsis leaves.2013 · DOI: 10.1074/jbc.m113.499228
`At5g56660`	Hydrolyzes certain amino acid conjugates of the plant growth regulator indole-3-acetic acid (IAA), including IAA-Ala, IAA-Leu, IAA-Met, IAA-Phe, IAA-Ser, IAA-Thr, IAA-Tyr and IAA-Val.	Characterization of a family of IAA-amino acid conjugate hydrolases from Arabidopsis.2002 · DOI: 10.1074/jbc.m111955200 A family of auxin-conjugate hydrolases that contributes to free indole-3-acetic acid levels during Arabidopsis germination.2004 · DOI: 10.1104/pp.104.039677
`At5g56650`	Hydrolyzes certain amino acid conjugates of the plant growth regulator indole-3-acetic acid (IAA), including IAA-Ala, IAA-Asn and IAA-Tyr.	Characterization of a family of IAA-amino acid conjugate hydrolases from Arabidopsis.2002 · DOI: 10.1074/jbc.m111955200

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: Q84XG9`	Hydrolyzes certain amino acid conjugates of the plant growth regulator indole-3-acetic acid (IAA).	No verified direct reference in this release
`Os01g0560000`	Hydrolyzes certain amino acid conjugates of the plant growth regulator indole-3-acetic acid (IAA).	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_020952 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009611 response to wounding Biological Process

GO:0009850 auxin metabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005788 endoplasmic reticulum lumen Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0010178 IAA-amino acid conjugate hydrolase activity Molecular Function

GO:0010179 IAA-Ala conjugate hydrolase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G51760

ath:AT5G56650

ath:AT5G56660

dosa:Os01g0560000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.318

Rank 1 · LXL04_020952 · OH-1004

Endoplasmic reticulum0.244

Rank 2 · LXL04_020952 · OH-1004

Cytoplasm0.206

Rank 3 · LXL04_020952 · OH-1004

Extracellular0.116

Rank 4 · LXL04_020952 · OH-1004

Nucleus0.066

Rank 5 · LXL04_020952 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01546.34Peptidase_M20118-429 aa

PF07687.20M20_dimer227-326 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_020952	`PF01546.34`	Peptidase_M20	118	429	1.4e-44	153.2
LXL04_020952	`PF07687.20`	M20_dimer	227	326	2.5e-11	44.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O04373`	Arabidopsis thaliana	IAA-amino acid hydrolase ILR1-like 4	57.908%	Swiss-Prot	strong database homology
`P54970`	Arabidopsis thaliana	IAA-amino acid hydrolase ILR1-like 2	56.576%	Swiss-Prot	strong database homology
`P54969`	Arabidopsis thaliana	IAA-amino acid hydrolase ILR1-like 1	57.179%	Swiss-Prot	strong database homology
`Q84XG9`	Oryza sativa subsp. indica	IAA-amino acid hydrolase ILR1-like 1	57.653%	Swiss-Prot	strong database homology
`Q8S9S4`	Oryza sativa subsp. japonica	IAA-amino acid hydrolase ILR1-like 1	57.143%	Swiss-Prot	strong database homology

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