Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1431 bp · LXL04_020552|LXL04_020552|OH1004|cDNA
ATGGAAGGGCTTCTTCATCTCCAAAAACGATCGAAGGGATTCCATCTCCAACAGCGATCAAAATTTTCAGCCATTTTTCTTCTGTCTCTCCTCAGGTACGGTACACGAGATGAAATTATGTTGTTTCGCTGCTGTAAATTTGTTTTTCTGATGATGAAGTTAGGCTGTTTCTTTGCTGTGAATTCCCTGGCGGGCCCACCACCATTTGCACAAGGCGGAAGCTTGATAAGGAAACAGGGTGCCACCATTAAAACCATTCA...
1431 bp · LXL04_020552|LXL04_020552|OH1004|CDS
ATGGAAGGGCTTCTTCATCTCCAAAAACGATCGAAGGGATTCCATCTCCAACAGCGATCAAAATTTTCAGCCATTTTTCTTCTGTCTCTCCTCAGGTACGGTACACGAGATGAAATTATGTTGTTTCGCTGCTGTAAATTTGTTTTTCTGATGATGAAGTTAGGCTGTTTCTTTGCTGTGAATTCCCTGGCGGGCCCACCACCATTTGCACAAGGCGGAAGCTTGATAAGGAAACAGGGTGCCACCATTAAAACCATTCA...
Protein
Download Protein FASTA476 aa · LXL04_020552|LXL04_020552|OH1004|PROTEIN
MEGLLHLQKRSKGFHLQQRSKFSAIFLLSLLRYGTRDEIMLFRCCKFVFLMMKLGCFFAVNSLAGPPPFAQGGSLIRKQGATIKTIQDFSNCKIRVIGGFPRRYSCRGIFVICTENLSIFVLPDDSAVEILGEVTGVHKAVELVLRKFLVARSVIGVFEMQVSTESPIPFRSFSDSINTGGGPGFGPNQFMPPQHQFDNFFPRADMPPPMDKQPHTAVQPQQSSVTKVSENMQIPLSYADAVIGTSSANISYIRRASGAT...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_020552 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_020552 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr04:89554723-89559356 (-) | |||||||||
| Description | Similar to FLK: Flowering locus K homology domain | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006351 DNA-templated transcription Biological Process GO:0006396 RNA processing Biological Process GO:0009299 mRNA transcription Biological Process GO:0009911 positive regulation of flower development Biological Process GO:0048367 shoot system development Biological Process GO:0048467 gynoecium development Biological Process GO:0048577 negative regulation of short-day photoperiodism, flowering Biological Process GO:0048579 negative regulation of long-day photoperiodism, flowering Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0003729 mRNA binding Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT3G04610 ath:AT4G26000 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00013.36KH_173-145 aaPF00013.36KH_1230-267 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_020552 | PF00013.36 | KH_1 | 73 | 145 | 6.1e-14 | 52.2 |
| LXL04_020552 | PF00013.36 | KH_1 | 230 | 267 | 6.1e-14 | 52.2 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.