Gene Card
Gene overview
cDNA / CDS / Protein Sequences
326 bp · LXL04_020349|LXL04_020349|OH1004|cDNA
AAAGTAGTTACCTTGCCATTTTTTTATACTTTGACATATATAATCAAGCTGTTTCATCTTTCTCTTATGAAcatgtatatatttttggtgCTGCACGTACATCACTTGGTGGATTTCTGGGTTCTCTATCATCTTTACCTGCCACCAAAGAAAAAAACATTGATCCATCACTTGTAGAAGAAGTTATTTTTGGAAATGTTCTTGGAGCCAATTTAGGACAGCATCCTGCCAGACAAGCAGCACTAGGTGCAAGAATCCCT...
210 bp · LXL04_020349|LXL04_020349|OH1004|CDS
CTGGGTTCTCTATCATCTTTACCTGCCACCAAAGAAAAAAACATTGATCCATCACTTGTAGAAGAAGTTATTTTTGGAAATGTTCTTGGAGCCAATTTAGGACAGCATCCTGCCAGACAAGCAGCACTAGGTGCAAGAATCCCTAACACAGTCCTCTCCAAATCTGTTAACAAAGGTTGTGCATCAGGGATGAAAGGTCACTTAAATTAA
Protein
Download Protein FASTA69 aa · LXL04_020349|LXL04_020349|OH1004|PROTEIN
MGSLSSLPATKEKNIDPSLVEEVIFGNVLGANLGQHPARQAALGARIPNTVLSKSVNKGCASGMKGHLN
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_020349 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_020349 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr04:68765042-68765579 (-) | |||||||||
| Description | Protein of unknown function | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006635 fatty acid beta-oxidation Biological Process GO:0006696 ergosterol biosynthetic process Biological Process GO:0008299 isoprenoid biosynthetic process Biological Process GO:0009846 pollen germination Biological Process GO:0009860 pollen tube growth Biological Process GO:0010142 farnesyl diphosphate biosynthetic process, mevalonate pathway Biological Process GO:0016125 sterol metabolic process Biological Process GO:0005737 cytoplasm Cellular Component GO:0005739 mitochondrion Cellular Component GO:0005777 peroxisome Cellular Component GO:0005829 cytosol Cellular Component GO:0005886 plasma membrane Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT5G47720 ath:AT5G48230 ddi:DDB_G0271544 fgr:FGSG_09321 spo:2540616 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00108.30Thiolase_N11-66 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_020349 | PF00108.30 | Thiolase_N | 11 | 66 | 1e-14 | 55.3 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.