LXL04_020255 | RubberDandelionOmics

Gene overview

LXL04_020255

Reference: OH-1004 Chr: Chr04 Coordinates: 60725782-60731734 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2754 bp · LXL04_020255|LXL04_020255|OH1004|cDNA

ATGGTGTGGATTAAATCTCAATACCCACACTCGGATTGCACACACTCGGATTGCACTCAGGATTGCACTCAAATTGCTTTTGTCTCTCCCACTCAATCGTACATCATCATCCCTTCTCCGAATCCATCATACAACCCATCCCTCCCCTATCTCTCAAATCTACCTCGCCCATACCTCTTCAATCGCACGCCTCCATCACCTACCCTCTCTATCCCTGGTTATAAGATATTGTCTCCATCCCTCTCATTTCTATCCTATAT...

CDS

Download CDS FASTA

2754 bp · LXL04_020255|LXL04_020255|OH1004|CDS

ATGGTGTGGATTAAATCTCAATACCCACACTCGGATTGCACACACTCGGATTGCACTCAGGATTGCACTCAAATTGCTTTTGTCTCTCCCACTCAATCGTACATCATCATCCCTTCTCCGAATCCATCATACAACCCATCCCTCCCCTATCTCTCAAATCTACCTCGCCCATACCTCTTCAATCGCACGCCTCCATCACCTACCCTCTCTATCCCTGGTTATAAGATATTGTCTCCATCCCTCTCATTTCTATCCTATAT...

Protein

Download Protein FASTA

917 aa · LXL04_020255|LXL04_020255|OH1004|PROTEIN

MVWIKSQYPHSDCTHSDCTQDCTQIAFVSPTQSYIIIPSPNPSYNPSLPYLSNLPRPYLFNRTPPSPTLSIPGYKILSPSLSFLSYISEKIPLVQAFPFSLDVMLETLIPNRKTTSGNQVPHASRTTATARTPPPPLSVQKTRQSNRQFVVRVTAKDIAFDQLSRSAMQAGIDKLADVVGLTLGPRGRNVVLNEYSSPKVVNDGVTIARAIELPYSMENAGAALIREVASKTNDSAGDGTTTALVLAREIIKLGLLSFTS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_020255`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_020255

Location Chr04:60725782-60731734 (+)

Description Similar to RuBisCO large subunit-binding protein subunit alpha, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g28000`	Binds RuBisCO small and large subunits and is implicated in the assembly of the enzyme oligomer.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_020255 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006457 protein folding Biological Process

GO:0009658 chloroplast organization Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0042026 protein refolding Biological Process

GO:0050821 protein stabilization Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005777 peroxisome Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0009579 thylakoid Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0010319 stromule Cellular Component

KEGG gene cross-reference

ath:AT2G28000

bna:106352579

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.294

Rank 1 · LXL04_020255 · OH-1004

Nucleus0.244

Rank 2 · LXL04_020255 · OH-1004

Cytoplasm0.229

Rank 3 · LXL04_020255 · OH-1004

Mitochondrion0.125

Rank 4 · LXL04_020255 · OH-1004

Endoplasmic reticulum0.105

Rank 5 · LXL04_020255 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00118.30Cpn60_TCP1175-269 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_020255	`PF00118.30`	Cpn60_TCP1	175	269	1.3e-17	64.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P21238`	Arabidopsis thaliana	Chaperonin 60 subunit alpha 1, chloroplastic	81.746%	Swiss-Prot	weak database homology

JBrowse

View in Genome Browser

Gene Card