Gene Card
Gene overview
cDNA / CDS / Protein Sequences
413 bp · LXL04_020001|LXL04_020001|OH1004|cDNA
TCATATTTCATCTTCCCCAAATGGCGACTAATCCTCTATTGTTAGGGATTGCTTCAAACTCATTTTTGAACTTTCAAATACCATCGATCAGCATCAAATTGGACAGGGATAACTATTCCCTATGGCGATCGACTATCATATCTGCTGAAACAATCACCGTCTCACCCACTGGAAATCAAAGGTTCGTATCTGGACTTGTGGCAGCCGATTACTTCGCCGCAGGCTATTTCGTTTGGGCAGTTTTGATCGCCAATTTAGCT...
393 bp · LXL04_020001|LXL04_020001|OH1004|CDS
ATGGCGACTAATCCTCTATTGTTAGGGATTGCTTCAAACTCATTTTTGAACTTTCAAATACCATCGATCAGCATCAAATTGGACAGGGATAACTATTCCCTATGGCGATCGACTATCATATCTGCTGAAACAATCACCGTCTCACCCACTGGAAATCAAAGGTTCGTATCTGGACTTGTGGCAGCCGATTACTTCGCCGCAGGCTATTTCGTTTGGGCAGTTTTGATCGCCAATTTAGCTCGCATAGGATACGAGGAGAA...
Protein
Download Protein FASTA130 aa · LXL04_020001|LXL04_020001|OH1004|PROTEIN
MATNPLLLGIASNSFLNFQIPSISIKLDRDNYSLWRSTIISAETITVSPTGNQRFVSGLVAADYFAAGYFVWAVLIANLARIGYEEKNMYMAAYDWRFSFQNTEVTVEFTLFGKDTLAELDVSEIVEEKK
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_020001 |
|---|---|
| TK1151 ID | TkA05G148560 |
| OH-1004 ID | LXL04_020001 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 87.800 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_020001 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr04:47089579-47090255 (+) | |||||||||
| Description | Similar to PDAT1: Phospholipid:diacylglycerol acyltransferase 1 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006071 glycerol metabolic process Biological Process GO:0006629 lipid metabolic process Biological Process GO:0006672 ceramide metabolic process Biological Process GO:0019432 triglyceride biosynthetic process Biological Process GO:0019915 lipid storage Biological Process GO:0046339 diacylglycerol metabolic process Biological Process GO:0055091 phospholipid homeostasis Biological Process GO:0140042 lipid droplet formation Biological Process GO:0000325 plant-type vacuole Cellular Component GO:0005634 nucleus Cellular Component GO:0005637 nuclear inner membrane Cellular Component GO:0005737 cytoplasm Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT3G44830 ath:AT5G13640 sce:YNR008W spo:2541187 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF02450.22LCAT48-102 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_020001 | PF02450.22 | LCAT | 48 | 102 | 4e-09 | 36.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.