LXL04_019976 | RubberDandelionOmics

Gene overview

LXL04_019976

Reference: OH-1004 Chr: Chr04 Coordinates: 46329505-46332331 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

876 bp · LXL04_019976|LXL04_019976|OH1004|cDNA

ATGGCAGGAAAGATGAATCTCAACAATATGAAGGTACCCAAGATGCCTGAAGGCCGTGCAGCTTCTGCATTGCTAAAGTTTGGTGCAGTTATTGGTATTGGATTATATGCAGCTGGTAACAGTTTGTACAATGTTGAGGGAGGGCATCGTGCAATTGTCTTCAATCGTATTGTTGGTGTCAAAGACAAGGTGTACCCTGAAGGGACCCACATCATGATCCCTTGGTTTGAAAGACCTATCATCTATGATGTTCGTGCACG...

CDS

Download CDS FASTA

876 bp · LXL04_019976|LXL04_019976|OH1004|CDS

ATGGCAGGAAAGATGAATCTCAACAATATGAAGGTACCCAAGATGCCTGAAGGCCGTGCAGCTTCTGCATTGCTAAAGTTTGGTGCAGTTATTGGTATTGGATTATATGCAGCTGGTAACAGTTTGTACAATGTTGAGGGAGGGCATCGTGCAATTGTCTTCAATCGTATTGTTGGTGTCAAAGACAAGGTGTACCCTGAAGGGACCCACATCATGATCCCTTGGTTTGAAAGACCTATCATCTATGATGTTCGTGCACG...

Protein

Download Protein FASTA

291 aa · LXL04_019976|LXL04_019976|OH1004|PROTEIN

MAGKMNLNNMKVPKMPEGRAASALLKFGAVIGIGLYAAGNSLYNVEGGHRAIVFNRIVGVKDKVYPEGTHIMIPWFERPIIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPIADELPAVYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQREAVSREIRKILTERAANFNMALDDVSITSLTFGREFTAAIEAKQVAAQEAERAKFVVEKAEQDKRSAIIRAQGEAKSAQLIGQAIANNPAFITLRKIEAARE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_019976`
TK1151 ID	TkA05G109610
OH-1004 ID	LXL04_019976
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 98.625 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_019976

Location Chr04:46329505-46332331 (-)

Description Similar to PHB1: Prohibitin-1, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g28510`	Prohibitin probably acts as a holdase/unfoldase for the stabilization of newly synthesized mitochondrial proteins.	No verified direct reference in this release
`At1g03860`	Prohibitin probably acts as a holdase/unfoldase for the stabilization of newly synthesized mitochondrial proteins.	No verified direct reference in this release
`At2g20530`	Prohibitin probably acts as a holdase/unfoldase for the stabilization of newly synthesized mitochondrial proteins.	No verified direct reference in this release
`At5g44140`	Prohibitin probably acts as a holdase/unfoldase for the stabilization of newly synthesized mitochondrial proteins.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_019976 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000423 mitophagy Biological Process

GO:0007005 mitochondrion organization Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005743 mitochondrial inner membrane Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT1G03860

ath:AT2G20530

ath:AT4G28510

ath:AT5G44140

ddi:DDB_G0284117

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.743

Rank 1 · LXL04_019976 · OH-1004

Plastid0.136

Rank 2 · LXL04_019976 · OH-1004

Cytoplasm0.135

Rank 3 · LXL04_019976 · OH-1004

Cell membrane0.135

Rank 4 · LXL04_019976 · OH-1004

Nucleus0.108

Rank 5 · LXL04_019976 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01145.32Band_744-221 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_019976	`PF01145.32`	Band_7	44	221	1.4e-30	107.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O49460`	Arabidopsis thaliana	Prohibitin-1, mitochondrial	84.099%	Swiss-Prot	strong database homology
`Q9ZNT7`	Arabidopsis thaliana	Prohibitin-2, mitochondrial	79.791%	Swiss-Prot	strong database homology
`Q9SIL6`	Arabidopsis thaliana	Prohibitin-6, mitochondrial	78.746%	Swiss-Prot	strong database homology
`Q9FFH5`	Arabidopsis thaliana	Prohibitin-7, mitochondrial	75.180%	Swiss-Prot	strong database homology

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