LXL04_019959 | RubberDandelionOmics

Gene overview

LXL04_019959

Reference: OH-1004 Chr: Chr04 Coordinates: 45700970-45707878 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1113 bp · LXL04_019959|LXL04_019959|OH1004|cDNA

ATGCGTGGCGTCGGGGCTGCTGTCCGTTCGGAAGTGGGCCTGGACGACGGCTGTGGTAGGTCGCGACTGATGCCAAGCTTTTTGGCGATGGAGAAGAGAAAGGAGGGAGGTTCGATCGCGATGGAGAATAGAAAGGAGCGGCCGATTAAGGGTATTCGAGATATGGTGGTGGCGATACGCAGAGATAAAGGGTATTTAGTTCTTGATAAGGACGAAGTTGACTATACTTTCATGGAGTCTAAATCAGAGTTTTTTAATGG...

CDS

Download CDS FASTA

1113 bp · LXL04_019959|LXL04_019959|OH1004|CDS

ATGCGTGGCGTCGGGGCTGCTGTCCGTTCGGAAGTGGGCCTGGACGACGGCTGTGGTAGGTCGCGACTGATGCCAAGCTTTTTGGCGATGGAGAAGAGAAAGGAGGGAGGTTCGATCGCGATGGAGAATAGAAAGGAGCGGCCGATTAAGGGTATTCGAGATATGGTGGTGGCGATACGCAGAGATAAAGGGTATTTAGTTCTTGATAAGGACGAAGTTGACTATACTTTCATGGAGTCTAAATCAGAGTTTTTTAATGG...

Protein

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370 aa · LXL04_019959|LXL04_019959|OH1004|PROTEIN

MRGVGAAVRSEVGLDDGCGRSRLMPSFLAMEKRKEGGSIAMENRKERPIKGIRDMVVAIRRDKGYLVLDKDEVDYTFMESKSEFFNGMGQSPSPSLVHLHHPRTPHKVSLVHPTRILKLMSSSAVVLLLVSAAPIEDNMRRPPVTTLVRSRRANPPLLRKPPDNWGKTRLLIPVWSRPSLQPFSPSLTQLRLPQALADYPSSPNHSRLRRPRPSFDSGPQLFCCKVFCTGIKLNGRSETLLRPKPFFFLHPHRNFTSIFF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_019959`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_019959

Location Chr04:45700970-45707878 (-)

Description Similar to PAE6: Pectin acetylesterase 6

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g62060`	Hydrolyzes acetyl esters in homogalacturonan regions of pectin.	No verified direct reference in this release
`At4g19420`	Hydrolyzes acetyl esters in homogalacturonan regions of pectin.	Identification and functional characterization of the distinct plant pectin esterases PAE8 and PAE9 and their deletion mutants.2014 · DOI: 10.1007/s00425-014-2139-6
`At3g05910`	Hydrolyzes acetyl esters in homogalacturonan regions of pectin.	No verified direct reference in this release
`At2g46930`	Hydrolyzes acetyl esters in homogalacturonan regions of pectin.	No verified direct reference in this release
`At3g09405`	Hydrolyzes acetyl esters in homogalacturonan regions of pectin.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_019959 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0071555 cell wall organization Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0016787 hydrolase activity Molecular Function

GO:0052793 pectin acetylesterase activity Molecular Function

KEGG gene cross-reference

ath:AT2G46930

ath:AT3G05910

ath:AT3G09405

ath:AT3G62060

ath:AT4G19420

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.437

Rank 1 · LXL04_019959 · OH-1004

Cytoplasm0.330

Rank 2 · LXL04_019959 · OH-1004

Endoplasmic reticulum0.130

Rank 3 · LXL04_019959 · OH-1004

Cell membrane0.129

Rank 4 · LXL04_019959 · OH-1004

Mitochondrion0.084

Rank 5 · LXL04_019959 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03283.20PAE295-332 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_019959	`PF03283.20`	PAE	295	332	1.3e-09	38.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q84JS1`	Arabidopsis thaliana	Pectin acetylesterase 6	50.000%	Swiss-Prot	weak database homology
`Q6DBP4`	Arabidopsis thaliana	Pectin acetylesterase 8	49.091%	Swiss-Prot	weak database homology
`Q9SFF6`	Arabidopsis thaliana	Pectin acetylesterase 12	35.714%	Swiss-Prot	weak database homology
`O80731`	Arabidopsis thaliana	Pectin acetylesterase 3	43.103%	Swiss-Prot	weak database homology
`Q9SR23`	Arabidopsis thaliana	Pectin acetylesterase 4	50.943%	Swiss-Prot	weak database homology

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