LXL04_019883 | RubberDandelionOmics

Gene overview

LXL04_019883

Reference: OH-1004 Chr: Chr04 Coordinates: 43090399-43098665 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3198 bp · LXL04_019883|LXL04_019883|OH1004|cDNA

TACTACTATTTTTGTCAAATTTAAACAAATCCCAAAAACCAAATCTGACCATCGGAAAACATACTTCACTTAAGCCGCCCCACTATCATGACAGATTCTCTGAATGTAGCCGTTATCGGAGCCGGCACATCCGGATTACTCACCGCCCGGGAGCTTATCCGTGAACACCACCGAGTCACCGTCTTCGAAAAATCAAACAAACTCGGCGGAACCTGGCTTTACGAACCGCGAGTCGAGTCCGACGACGATGTTCTTCATCT...

CDS

Download CDS FASTA

3111 bp · LXL04_019883|LXL04_019883|OH1004|CDS

ATGACAGATTCTCTGAATGTAGCCGTTATCGGAGCCGGCACATCCGGATTACTCACCGCCCGGGAGCTTATCCGTGAACACCACCGAGTCACCGTCTTCGAAAAATCAAACAAACTCGGCGGAACCTGGCTTTACGAACCGCGAGTCGAGTCCGACGACGATGTTCTTCATCTCGACCCCAACAGATCCGTTGTCCACAGCAGTCTCTACTCATCTCTCAGAACAAATCTTCCTCGGCCACTCATGGGTTTCTCCGATTA...

Protein

Download Protein FASTA

1036 aa · LXL04_019883|LXL04_019883|OH1004|PROTEIN

MTDSLNVAVIGAGTSGLLTARELIREHHRVTVFEKSNKLGGTWLYEPRVESDDDVLHLDPNRSVVHSSLYSSLRTNLPRPLMGFSDYSLDDKSYGDPRTFPGHEEVLKLLQDFANEFRVTEVIRFNSEVVRVDSSDGGFVVEWKTMEVGSTEEVFDAVVVCNGHHTEPQVADDVPGIEEWSRKQVHSHNYRIPEPYRDQVVVVIGNGPSALDISQEIATVAKEVHLSSRSTNVKVTMLDGYKNMWQHSKINRVYDDGRVV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_019883`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_019883

Location Chr04:43090399-43098665 (-)

Description Similar to PLT4: Probable polyol transporter 4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g20780`	Plasma membrane sugar-proton symporter.	No verified direct reference in this release
`At3g18830`	Plasma membrane broad-spectrum sugar-proton symporter.	Analysis of transport activity of Arabidopsis sugar alcohol permease homolog AtPLT5.2005 · DOI: 10.1074/jbc.m410831200 Arabidopsis POLYOL TRANSPORTER5, a new member of the monosaccharide transporter-like superfamily, mediates H+-Symport of numerous substrates, including myo-inositol, glycerol, and ribose.2005 · DOI: 10.1105/tpc.104.026641
`At2g16120`	Plasma membrane sugar-proton symporter.	No verified direct reference in this release
`At2g16130`	Plasma membrane sugar-proton symporter.	No verified direct reference in this release
`At1g62560`	Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_019883 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0010311 lateral root formation Biological Process

GO:0019761 glucosinolate biosynthetic process Biological Process

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0090406 pollen tube Cellular Component

GO:0004497 monooxygenase activity Molecular Function

GO:0004499 N,N-dimethylaniline monooxygenase activity Molecular Function

GO:0005351 carbohydrate:proton symporter activity Molecular Function

GO:0005354 galactose transmembrane transporter activity Molecular Function

GO:0005365 myo-inositol transmembrane transporter activity Molecular Function

GO:0015145 monosaccharide transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G62560

ath:AT2G16120

ath:AT2G16130

ath:AT2G20780

ath:AT3G18830

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.277

Rank 1 · LXL04_019883 · OH-1004

Lysosome / Vacuole0.268

Rank 2 · LXL04_019883 · OH-1004

Endoplasmic reticulum0.225

Rank 3 · LXL04_019883 · OH-1004

Golgi apparatus0.160

Rank 4 · LXL04_019883 · OH-1004

Cytoplasm0.147

Rank 5 · LXL04_019883 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00743.26FMO-like6-232 aa

PF07992.21Pyr_redox_26-279 aa

PF03486.21HI0933_like6-169 aa

PF01266.31DAO7-42 aa

PF13454.13NAD_binding_98-164 aa

PF13450.13NAD_binding_89-46 aa

PF13738.13Pyr_redox_3100-296 aa

PF00743.26FMO-like256-387 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_019883	`PF00743.26`	FMO-like	6	232	4.9e-58	197.6
LXL04_019883	`PF07992.21`	Pyr_redox_2	6	279	2.3e-14	54.2
LXL04_019883	`PF03486.21`	HI0933_like	6	169	2.8e-06	27.7
LXL04_019883	`PF01266.31`	DAO	7	42	2.3e-12	47.8
LXL04_019883	`PF13454.13`	NAD_binding_9	8	164	7.5e-08	33.2
LXL04_019883	`PF13450.13`	NAD_binding_8	9	46	8.8e-08	33.0
LXL04_019883	`PF13738.13`	Pyr_redox_3	100	296	8.1e-17	62.1
LXL04_019883	`PF00743.26`	FMO-like	256	387	4.9e-58	197.6
LXL04_019883	`PF00083.31`	Sugar_tr	567	1006	4.8e-106	356.0
LXL04_019883	`PF07690.22`	MFS_1	572	954	4.2e-32	112.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q0WUU6`	Arabidopsis thaliana	Probable polyol transporter 4	65.465%	Swiss-Prot	moderate database homology
`Q8VZ80`	Arabidopsis thaliana	Polyol transporter 5	46.774%	Swiss-Prot	weak database homology
`Q9XIH7`	Arabidopsis thaliana	Putative polyol transporter 1	45.691%	Swiss-Prot	weak database homology
`Q9XIH6`	Arabidopsis thaliana	Putative polyol transporter 2	44.800%	Swiss-Prot	weak database homology
`Q9SXE1`	Arabidopsis thaliana	Flavin-containing monooxygenase FMO GS-OX3	50.577%	Swiss-Prot	weak database homology

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