Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1155 bp · LXL04_019740|LXL04_019740|OH1004|cDNA
ATGCCTATGTGCTTATATGGATGTAAACATAAAATTGATTTTGCCCTAGCTCCGCTCCAGTGCTCGGCCGCAACCCGCAAGAACGCAAGTGCTCTCCCCGTCTCCCGCTCAGCGACGACGATCAAAGGCTCAGGCGACGCAGAGAGCCAGTGCTCCGCTCAAGTGCTCGGCCGCAACCCGCAAGAACGCGAGTGCCCTAGCTCCGCTCCAGTGCTCGGCCGCATCTCTCACGTCTCCGTCTTCTTTGTCATCTCCACACT...
1155 bp · LXL04_019740|LXL04_019740|OH1004|CDS
ATGCCTATGTGCTTATATGGATGTAAACATAAAATTGATTTTGCCCTAGCTCCGCTCCAGTGCTCGGCCGCAACCCGCAAGAACGCAAGTGCTCTCCCCGTCTCCCGCTCAGCGACGACGATCAAAGGCTCAGGCGACGCAGAGAGCCAGTGCTCCGCTCAAGTGCTCGGCCGCAACCCGCAAGAACGCGAGTGCCCTAGCTCCGCTCCAGTGCTCGGCCGCATCTCTCACGTCTCCGTCTTCTTTGTCATCTCCACACT...
Protein
Download Protein FASTA384 aa · LXL04_019740|LXL04_019740|OH1004|PROTEIN
MPMCLYGCKHKIDFALAPLQCSAATRKNASALPVSRSATTIKGSGDAESQCSAQVLGRNPQERECPSSAPVLGRISHVSVFFVISTLIHHLRRRPSTLHLPQLDDRLPSAFNLYPNRRASTTTSAFNLHPNRRSLLASPIDELRPPLQPSTYTPTDGLFWLLQSTKMVVYGPVVVLVSVLRFAGLGYEVYEICGVNASADLQDCLDKKKAQSAIMMESSSKARKQMSELEQKLYLANKERIELEQEYRHRQNNAVKMGKR...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_019740 |
|---|---|
| TK1151 ID | TkA01G618560 |
| OH-1004 ID | LXL04_019740 |
| Relationship / confidence | Multi Candidate From Tk1151 / Complex relationship |
| Protein identity (%) | 64.400 |
| Protein coverage (%) | TK1151 83.828 / OH-1004 95.833Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_019740 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr04:38939374-38942586 (-) | |||||||||
| Description | Similar to SMC6B: Structural maintenance of chromosomes protein 6B | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0000724 double-strand break repair via homologous recombination Biological Process GO:0006302 double-strand break repair Biological Process GO:0007062 sister chromatid cohesion Biological Process GO:0010165 response to X-ray Biological Process GO:0005634 nucleus Cellular Component GO:0030915 Smc5-Smc6 complex Cellular Component GO:0035861 site of double-strand break Cellular Component GO:0003684 damaged DNA binding Molecular Function GO:0003697 single-stranded DNA binding Molecular Function GO:0005524 ATP binding Molecular Function GO:0016887 ATP hydrolysis activity Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT5G07660 ath:AT5G61460 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
No result was found for this query.
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.