LXL04_019505 | RubberDandelionOmics

Gene overview

LXL04_019505

Reference: OH-1004 Chr: Chr04 Coordinates: 32743864-32745591 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1728 bp · LXL04_019505|LXL04_019505|OH1004|cDNA

ATGATGATTTCTGAACTGCACCATCTGCTTTGCCCACCAACTGTTTGTAAAAATGCCTGTACCGGGAACGGGCCATCTTTCATATCATTCAAGAGGAGAAACTTTTGCGTATCAGAACCTACAATCCGAGTTAAACCTACCGTTGTTTATTCAAATCAATCACAAGCTACTGTAACCACTAATCGAATTTCACGGGTGGTAAGAACAGAGGCACAAACTGCACTTTTTGATTATTTACATTTCACAAGAGGCTTCCATTT...

CDS

Download CDS FASTA

1728 bp · LXL04_019505|LXL04_019505|OH1004|CDS

ATGATGATTTCTGAACTGCACCATCTGCTTTGCCCACCAACTGTTTGTAAAAATGCCTGTACCGGGAACGGGCCATCTTTCATATCATTCAAGAGGAGAAACTTTTGCGTATCAGAACCTACAATCCGAGTTAAACCTACCGTTGTTTATTCAAATCAATCACAAGCTACTGTAACCACTAATCGAATTTCACGGGTGGTAAGAACAGAGGCACAAACTGCACTTTTTGATTATTTACATTTCACAAGAGGCTTCCATTT...

Protein

Download Protein FASTA

575 aa · LXL04_019505|LXL04_019505|OH1004|PROTEIN

MMISELHHLLCPPTVCKNACTGNGPSFISFKRRNFCVSEPTIRVKPTVVYSNQSQATVTTNRISRVVRTEAQTALFDYLHFTRGFHFTDAEHISKNSPNFIQNLLTVVDNEQDISRALSKYFRYNPINEFEPFLESLGLNPSEHPSLLPKSLIFLGDDSLLLDNFHALCGYGIPRIKIGKMYKEAKEIFEYEHGALPKKLKAYEELGLSKSTVIKLVTCCPSLLIEAIDNNFLTVLEKLKRFGFGSEWISTYITERTNLN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_019505`
TK1151 ID	TkAUNG072010
OH-1004 ID	LXL04_019505
Relationship / confidence	Rbh High Identity Coverage Local Synteny Minor Chr Pair / Probable
Protein identity (%)	99.300
Protein coverage (%)	TK1151 97.623 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_019505

Location Chr04:32743864-32745591 (+)

Description Similar to MTERF18: Transcription termination factor MTEF18, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g60400`	Transcription termination factor involved in the regulation of mitochondrial-encoded gene expression.	Mutations in an Arabidopsis mitochondrial transcription termination factor-related protein enhance thermotolerance in the absence of the major molecular chaperone HSP101.2012 · DOI: 10.1105/tpc.112.101006
`At1g74120`	Transcription termination factor required for mitochondrial NAD2 intron 3 splicing and normal membrane respiratory chain Complex I activity.	Arabidopsis mTERF15 is required for mitochondrial nad2 intron 3 splicing and functional complex I activity.2014 · DOI: 10.1371/journal.pone.0112360

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0404000`	Transcription termination factor required for processing and steady-state levels of plastid transcripts.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_019505 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0006353 DNA-templated transcription termination Biological Process

GO:0007005 mitochondrion organization Biological Process

GO:0008380 RNA splicing Biological Process

GO:0009658 chloroplast organization Biological Process

GO:0009733 response to auxin Biological Process

GO:0009735 response to cytokinin Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009739 response to gibberellin Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

GO:0061668 mitochondrial ribosome assembly Biological Process

KEGG gene cross-reference

ath:AT1G74120

ath:AT3G60400

dosa:Os05g0404000

gga:420237

hsa:51001

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.545

Rank 1 · LXL04_019505 · OH-1004

Mitochondrion0.357

Rank 2 · LXL04_019505 · OH-1004

Nucleus0.056

Rank 3 · LXL04_019505 · OH-1004

Cytoplasm0.030

Rank 4 · LXL04_019505 · OH-1004

Cell membrane0.012

Rank 5 · LXL04_019505 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02536.20mTERF123-229 aa

PF02536.20mTERF268-429 aa

PF02536.20mTERF449-550 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_019505	`PF02536.20`	mTERF	123	229	8.3e-41	140.6
LXL04_019505	`PF02536.20`	mTERF	268	429	8.3e-41	140.6
LXL04_019505	`PF02536.20`	mTERF	449	550	8.3e-41	140.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9M219`	Arabidopsis thaliana	Transcription termination factor MTEF18, mitochondrial	27.087%	Swiss-Prot	weak database homology
`Q9C6A1`	Arabidopsis thaliana	Transcription termination factor MTERF15, mitochondrial	20.442%	Swiss-Prot	weak database homology
`Q6AUK6`	Oryza sativa subsp. japonica	Transcription termination factor MTERF4, chloroplastic	23.007%	Swiss-Prot	weak database homology

JBrowse

View in Genome Browser

Gene Card