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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_019114
Reference: OH-1004 Chr: Chr04 Coordinates: 24012048-24013613 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1566 bp · LXL04_019114|LXL04_019114|OH1004|cDNA

ATGACGACGGCCATGGCCATGGCATCTCCCAAGATCCGTCGATTCTTATCAGAAATCCCATCTCAGATCCTTGCAACAATCTCCTCCGTAACCACTCTCCTCCAAATCATAAACCCACAACACCCAAATCACCCTCTTAATCCAAACCCTTCCATCCTCAACCACTTCTCCCCACATTTAAACCCTCATTTCGTCATTCGAGTCATACAGAACCAGCAAAACCCCTACCATGCCCTCTTCTTCTTTAACTGGGCCTCAAA...

CDS

Download CDS FASTA

1566 bp · LXL04_019114|LXL04_019114|OH1004|CDS

ATGACGACGGCCATGGCCATGGCATCTCCCAAGATCCGTCGATTCTTATCAGAAATCCCATCTCAGATCCTTGCAACAATCTCCTCCGTAACCACTCTCCTCCAAATCATAAACCCACAACACCCAAATCACCCTCTTAATCCAAACCCTTCCATCCTCAACCACTTCTCCCCACATTTAAACCCTCATTTCGTCATTCGAGTCATACAGAACCAGCAAAACCCCTACCATGCCCTCTTCTTCTTTAACTGGGCCTCAAA...

Protein

Download Protein FASTA

521 aa · LXL04_019114|LXL04_019114|OH1004|PROTEIN

MTTAMAMASPKIRRFLSEIPSQILATISSVTTLLQIINPQHPNHPLNPNPSILNHFSPHLNPHFVIRVIQNQQNPYHALFFFNWASNPTPNPNNYSHNHLSYIAITDLLLSRNLFSLATELLESSNKLSDFMVGKLIKAHGDLGHIRWALHLFHRVRARYSSRCLFSYNAILGVLVRADRVDMAEKIFNQMTTESTLNPDVSTCTVMIKGLCKTGMLEKAQKLFDEMPSSRNLHTYNTMVSGMCKKGLMDSALELVSRMK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_019114
TK1151 IDTkA05G020130
OH-1004 IDLXL04_019114
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)99.700
Protein coverage (%)TK1151 84.551 / OH-1004 57.774
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_019114
LocationChr04:24012048-24013613 (-)
DescriptionSimilar to EMB2745: Pentatricopeptide repeat-containing protein At5g39710
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g39710 Pentatricopeptide repeat-containing protein At5g39710. No verified direct reference in this release
At2g06000 Pentatricopeptide repeat-containing protein At2g06000. No verified direct reference in this release
At1g02060 Pentatricopeptide repeat-containing protein At1g02060, chloroplastic. No verified direct reference in this release
At3g53700 May be involved in female gametophyte development. No verified direct reference in this release
At5g16420 Pentatricopeptide repeat-containing protein At5g16420, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_019114 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT5G39710
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.815
Rank 1 · LXL04_019114 · OH-1004
Plastid0.070
Rank 2 · LXL04_019114 · OH-1004
Nucleus0.068
Rank 3 · LXL04_019114 · OH-1004
Cytoplasm0.032
Rank 4 · LXL04_019114 · OH-1004
Cell membrane0.009
Rank 5 · LXL04_019114 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041.13PPR_2165-213 aa
PF01535.27PPR166-192 aa
PF12854.14PPR_1197-227 aa
PF13041.13PPR_2199-229 aa
PF01535.27PPR202-230 aa
PF12854.14PPR_1231-260 aa
PF13041.13PPR_2232-281 aa
PF17177.11PPR_long234-331 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_019114PF13041.13PPR_21652135.3e-84276.9
LXL04_019114PF01535.27PPR1661924.5e-63205.9
LXL04_019114PF12854.14PPR_11972275.5e-68225.1
LXL04_019114PF13041.13PPR_21992295.3e-84276.9
LXL04_019114PF01535.27PPR2022304.5e-63205.9
LXL04_019114PF12854.14PPR_12312605.5e-68225.1
LXL04_019114PF13041.13PPR_22322815.3e-84276.9
LXL04_019114PF17177.11PPR_long2343315.8e-1969.0
LXL04_019114PF01535.27PPR2352614.5e-63205.9
LXL04_019114PF13812.13PPR_32633136.2e-37126.2
LXL04_019114PF12854.14PPR_12642955.5e-68225.1
LXL04_019114PF13041.13PPR_22673155.3e-84276.9
LXL04_019114PF01535.27PPR2702994.5e-63205.9
LXL04_019114PF12854.14PPR_12983315.5e-68225.1
LXL04_019114PF13041.13PPR_23023505.3e-84276.9
LXL04_019114PF01535.27PPR3053354.5e-63205.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FIX3Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g3971028.200%Swiss-Protweak database homology
Q9ZUE9Arabidopsis thalianaPentatricopeptide repeat-containing protein At2g0600028.636%Swiss-Protweak database homology
O81908Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g02060, chloroplastic29.339%Swiss-Protweak database homology
Q9LFF1Arabidopsis thalianaPentatricopeptide repeat-containing protein At3g53700, chloroplastic30.747%Swiss-Protmoderate database homology
Q9FFE3Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g16420, mitochondrial27.756%Swiss-Protweak database homology

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