LXL04_019110 | RubberDandelionOmics

Gene overview

LXL04_019110

Reference: OH-1004 Chr: Chr04 Coordinates: 23868471-23869217 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

747 bp · LXL04_019110|LXL04_019110|OH1004|cDNA

ATGGAGGTCGATCGTACGGTGTCCGTACGATCGTCTGTTAAGTTCTCGGAGCACGTTGTAACAACGAGTAAATTTCTCCACGGAGAGCCTCCGGCTTCGTCCATTAAGCAGAGGATCGTTAGGATTACGCTAACTGACCCCTATGCCACCGATTCCTCTAGCGAAGACGAAGAACGAGTCGTTAAGAGAGTGAAGAAACATGTTTCTGTTATCGAATTTAGCTCTCCTTCTTTGAAATTCGCTAAACGGAATAGTAGATC...

CDS

Download CDS FASTA

747 bp · LXL04_019110|LXL04_019110|OH1004|CDS

ATGGAGGTCGATCGTACGGTGTCCGTACGATCGTCTGTTAAGTTCTCGGAGCACGTTGTAACAACGAGTAAATTTCTCCACGGAGAGCCTCCGGCTTCGTCCATTAAGCAGAGGATCGTTAGGATTACGCTAACTGACCCCTATGCCACCGATTCCTCTAGCGAAGACGAAGAACGAGTCGTTAAGAGAGTGAAGAAACATGTTTCTGTTATCGAATTTAGCTCTCCTTCTTTGAAATTCGCTAAACGGAATAGTAGATC...

Protein

Download Protein FASTA

248 aa · LXL04_019110|LXL04_019110|OH1004|PROTEIN

MEVDRTVSVRSSVKFSEHVVTTSKFLHGEPPASSIKQRIVRITLTDPYATDSSSEDEERVVKRVKKHVSVIEFSSPSLKFAKRNSRSTEKKFRGVRRRPWGRWAAEIRDPNRRKRVWLGTFDTPEEAATVYDEAAIKLKGTSAVTNFPRVTVTRTVTVDKQSLPTVTTSSSGSEEPLNNAAMSPTSVLRGNADQTAFDGLHCLDMDSIGFDIDLPFDLPDFVVSENYCGEEFGDFNIDDFLVDFRESC

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_019110`
TK1151 ID	TkA05G019220
OH-1004 ID	LXL04_019110
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_019110

Location Chr04:23868471-23869217 (+)

Description Similar to PTI6: Pathogenesis-related genes transcriptional activator PTI6

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g11140`	Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development.	No verified direct reference in this release
`At4g27950`	Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development.	No verified direct reference in this release
`At3g61630`	Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development.	No verified direct reference in this release
`At2g46310`	Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_019110 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006952 defense response Biological Process

GO:0009736 cytokinin-activated signaling pathway Biological Process

GO:0009873 ethylene-activated signaling pathway Biological Process

GO:0048366 leaf development Biological Process

GO:0048825 cotyledon development Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

KEGG gene cross-reference

ath:AT2G46310

ath:AT3G61630

ath:AT4G11140

ath:AT4G27950

sly:544043

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.968

Rank 1 · LXL04_019110 · OH-1004

Cytoplasm0.095

Rank 2 · LXL04_019110 · OH-1004

Cell membrane0.025

Rank 3 · LXL04_019110 · OH-1004

Endoplasmic reticulum0.016

Rank 4 · LXL04_019110 · OH-1004

Plastid0.016

Rank 5 · LXL04_019110 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00847.27AP291-140 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_019110	`PF00847.27`	AP2	91	140	7e-17	62.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O82503`	Arabidopsis thaliana	Ethylene-responsive transcription factor CRF1	46.243%	Swiss-Prot	moderate database homology
`Q9SUE3`	Arabidopsis thaliana	Ethylene-responsive transcription factor CRF4	40.000%	Swiss-Prot	moderate database homology
`Q9M374`	Arabidopsis thaliana	Ethylene-responsive transcription factor CRF6	38.697%	Swiss-Prot	moderate database homology
`O82339`	Arabidopsis thaliana	Ethylene-responsive transcription factor CRF5	39.004%	Swiss-Prot	moderate database homology

JBrowse

View in Genome Browser

Gene Card