LXL04_019058 | RubberDandelionOmics

Gene overview

LXL04_019058

Reference: OH-1004 Chr: Chr04 Coordinates: 22849562-22853534 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2469 bp · LXL04_019058|LXL04_019058|OH1004|cDNA

ATGGTGCACCGAGAACAAAACAAGATCAGACTTTGTCTTCTAATACTATTGTGCATTTTAGACCGTGCATTATCTGCAAACTCCATTCCATCacaaaatcaaaatatcaacataaataatGATATATCAATAGGCGTGGGGGTCATTCTAGATATGGAGTCATGGATAGGGAAGTCCATTCACAGGTGCATTACCATGGCGATATCAGATATTTATGCTCTTAATCACAATTACAAAACTAAGATAGTTATTCACACTAG...

CDS

Download CDS FASTA

2469 bp · LXL04_019058|LXL04_019058|OH1004|CDS

ATGGTGCACCGAGAACAAAACAAGATCAGACTTTGTCTTCTAATACTATTGTGCATTTTAGACCGTGCATTATCTGCAAACTCCATTCCATCACAAAATCAAAATATCAACATAAATAATGATATATCAATAGGCGTGGGGGTCATTCTAGATATGGAGTCATGGATAGGGAAGTCCATTCACAGGTGCATTACCATGGCGATATCAGATATTTATGCTCTTAATCACAATTACAAAACTAAGATAGTTATTCACACTAG...

Protein

Download Protein FASTA

822 aa · LXL04_019058|LXL04_019058|OH1004|PROTEIN

MVHREQNKIRLCLLILLCILDRALSANSIPSQNQNININNDISIGVGVILDMESWIGKSIHRCITMAISDIYALNHNYKTKIVIHTRDSKGDPLKALSAVQHLLKKANVQAIIGPETHLQSKLLSTLDDKAKIPIFSFASPSSRKDPYLFQIKQDESTMAKSIAALVNSYNWRDVIFVHEDTDDGREILQYLAESFHDKNIRISYRTSISASDTHDEITEELRKIMTFHTTVVIIHMSPSLASNLFLNAKSLGMVSEEYA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_019058`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_019058

Location Chr04:22849562-22853534 (+)

Description Similar to GLR1.3: Glutamate receptor 1.3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g48410`	Glutamate-gated receptor that probably acts as a non-selective cation channel.	No verified direct reference in this release
`At5g48400`	Glutamate-gated receptor that probably acts as a non-selective cation channel.	No verified direct reference in this release
`At3g07520`	Glutamate-gated receptor that probably acts as a non-selective cation channel.	Arabidopsis thaliana glutamate receptor ion channel function demonstrated by ion pore transplantation.2008 · DOI: 10.1016/j.jmb.2008.06.076
`At2g29120`	Glutamate-gated receptor that probably acts as a non-selective cation channel.	No verified direct reference in this release
`At5g11210`	Glutamate-gated receptor that probably acts as a non-selective cation channel.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_019058 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006816 calcium ion transport Biological Process

GO:0006874 intracellular calcium ion homeostasis Biological Process

GO:0009416 response to light stimulus Biological Process

GO:0019722 calcium-mediated signaling Biological Process

GO:0030003 intracellular monoatomic cation homeostasis Biological Process

GO:0071230 cellular response to amino acid stimulus Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0004930 G protein-coupled receptor activity Molecular Function

GO:0005261 monoatomic cation channel activity Molecular Function

GO:0005262 calcium channel activity Molecular Function

GO:0008066 glutamate receptor activity Molecular Function

KEGG gene cross-reference

ath:AT2G29120

ath:AT3G07520

ath:AT5G11210

ath:AT5G48400

ath:AT5G48410

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.826

Rank 1 · LXL04_019058 · OH-1004

Endoplasmic reticulum0.074

Rank 2 · LXL04_019058 · OH-1004

Cytoplasm0.064

Rank 3 · LXL04_019058 · OH-1004

Lysosome / Vacuole0.034

Rank 4 · LXL04_019058 · OH-1004

Nucleus0.029

Rank 5 · LXL04_019058 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13458.13Peripla_BP_644-349 aa

PF01094.35ANF_receptor63-383 aa

PF10613.15Lig_chan-Glu_bd442-543 aa

PF00497.26SBP_bac_3463-764 aa

PF00060.33Lig_chan556-795 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_019058	`PF13458.13`	Peripla_BP_6	44	349	2.9e-14	54.2
LXL04_019058	`PF01094.35`	ANF_receptor	63	383	1.1e-65	222.8
LXL04_019058	`PF10613.15`	Lig_chan-Glu_bd	442	543	4.9e-09	37.0
LXL04_019058	`PF00497.26`	SBP_bac_3	463	764	8.7e-15	55.4
LXL04_019058	`PF00060.33`	Lig_chan	556	795	1.2e-20	74.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FH75`	Arabidopsis thaliana	Glutamate receptor 1.3	36.420%	Swiss-Prot	moderate database homology
`Q9LV72`	Arabidopsis thaliana	Glutamate receptor 1.2	36.421%	Swiss-Prot	moderate database homology
`Q8LGN1`	Arabidopsis thaliana	Glutamate receptor 1.4	36.146%	Swiss-Prot	moderate database homology
`Q8LGN0`	Arabidopsis thaliana	Glutamate receptor 2.7	35.793%	Swiss-Prot	moderate database homology
`Q9LFN5`	Arabidopsis thaliana	Glutamate receptor 2.5	34.146%	Swiss-Prot	moderate database homology

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