Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2154 bp · LXL04_019032|LXL04_019032|OH1004|cDNA
ATGGCTCATTGGCTCAAAGCTGCTGAAGATTTGTTTGAAGTTGTAGATCGAAGGGCAAAGCTTGTAGTTGGAGATGAGTTACCAAATTCTTCACAGCCACCAGCTTCCAATGGACAAGGATCTCGAGCAAAGAGTAAAAAGTCAAGAGCAAGGGCTAAAAAGGAAAAACATTTAGATGAAACATTAGTGCCATCTGATAAAGATATACCTACTGCTTCAACCGATAATGATGAAACTAATCATGCTGATTCTTCTTCAAA...
2154 bp · LXL04_019032|LXL04_019032|OH1004|CDS
ATGGCTCATTGGCTCAAAGCTGCTGAAGATTTGTTTGAAGTTGTAGATCGAAGGGCAAAGCTTGTAGTTGGAGATGAGTTACCAAATTCTTCACAGCCACCAGCTTCCAATGGACAAGGATCTCGAGCAAAGAGTAAAAAGTCAAGAGCAAGGGCTAAAAAGGAAAAACATTTAGATGAAACATTAGTGCCATCTGATAAAGATATACCTACTGCTTCAACCGATAATGATGAAACTAATCATGCTGATTCTTCTTCAAA...
Protein
Download Protein FASTA717 aa · LXL04_019032|LXL04_019032|OH1004|PROTEIN
MAHWLKAAEDLFEVVDRRAKLVVGDELPNSSQPPASNGQGSRAKSKKSRARAKKEKHLDETLVPSDKDIPTASTDNDETNHADSSSKTEDNEQQKVNDVPMSLSSSGDHPQHDTMDSKDPSTAIGEDAPPILNGDTLNRTSSKSGEEISSVPVTLEESESDKSHPIDGGQDVLIKDKGSELVVNKEGSQSLTSDIHSKVNSRKDGNLKIEPQIDEKKNEEDKSVTTTTTTPTKVQDQLESPKKIQDESGSPKKAPDQTGP...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_019032 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_019032 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr04:22376925-22382492 (+) | ||||||||||||
| Description | Similar to GC1: Golgin candidate 1 | ||||||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
Rice
| ||||||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||||||||
| GO annotations (OH1004 source) | GO:0000301 retrograde transport, vesicle recycling within Golgi Biological Process GO:0007030 Golgi organization Biological Process GO:0048193 Golgi vesicle transport Biological Process GO:0000137 Golgi cis cisterna Cellular Component GO:0000138 Golgi trans cisterna Cellular Component GO:0000139 Golgi membrane Cellular Component GO:0005739 mitochondrion Cellular Component GO:0005794 Golgi apparatus Cellular Component GO:0005797 Golgi medial cisterna Cellular Component GO:0005801 cis-Golgi network Cellular Component GO:0016020 membrane Cellular Component GO:0030663 COPI-coated vesicle membrane Cellular Component | ||||||||||||
| KEGG gene cross-reference | ath:AT2G19950 dosa:Os01g0744400 dre:406720 mmu:27277 rno:299258 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF09787.15Golgin_A5453-689 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_019032 | PF09787.15 | Golgin_A5 | 453 | 689 | 2e-23 | 84.1 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.