LXL04_019016 | RubberDandelionOmics

Gene overview

LXL04_019016

Reference: OH-1004 Chr: Chr04 Coordinates: 22095246-22096446 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

876 bp · LXL04_019016|LXL04_019016|OH1004|cDNA

ATGGGAAGCTTCCAAGCTTTGGTTGCAGCTGCATGTATCTCAATGATCGCATTTCAATCATGCTTTGTCCATGGAAAGTTCTATGATGATATGTATTTCAACTGGGGTGCCAAGCGTTCATACATTTATAACAATGGTGATAATATTGATCTGGTTCTTGATAAAGCTTCAGGATCTGGTGTTCAATCACACAAGGCGTTTCTTTATGGAAGCATTGAAATGCTAATTAAATTGGTTCCAGGGAACTCTGCTGGAACTGT...

CDS

Download CDS FASTA

876 bp · LXL04_019016|LXL04_019016|OH1004|CDS

ATGGGAAGCTTCCAAGCTTTGGTTGCAGCTGCATGTATCTCAATGATCGCATTTCAATCATGCTTTGTCCATGGAAAGTTCTATGATGATATGTATTTCAACTGGGGTGCCAAGCGTTCATACATTTATAACAATGGTGATAATATTGATCTGGTTCTTGATAAAGCTTCAGGATCTGGTGTTCAATCACACAAGGCGTTTCTTTATGGAAGCATTGAAATGCTAATTAAATTGGTTCCAGGGAACTCTGCTGGAACTGT...

Protein

Download Protein FASTA

291 aa · LXL04_019016|LXL04_019016|OH1004|PROTEIN

MGSFQALVAAACISMIAFQSCFVHGKFYDDMYFNWGAKRSYIYNNGDNIDLVLDKASGSGVQSHKAFLYGSIEMLIKLVPGNSAGTVTAYYLSSTGDYHDEIDFEFLGNSSGQPYTMHTNIFTQGKGNREQQFKLWFDPTTDFHNYTIHWNPTAVVWYVDSIPIRVYRNYIHEGIGFPHQQGMQVYSSLWNADNWATRGGLVKIDWSCAPFMAGLRKFNARACKWNGPLSIFQCAFPTQANWWTSPAYKQLSTEQQGKLK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_019016`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_019016

Location Chr04:22095246-22096446 (+)

Description Similar to XTH26: Probable xyloglucan endotransglucosylase/hydrolase protein 26

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g28850`	Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET).	No verified direct reference in this release
`At4g25810`	Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET).	No verified direct reference in this release
`At5g57550`	Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_019016 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009832 plant-type cell wall biogenesis Biological Process

GO:0009834 plant-type secondary cell wall biogenesis Biological Process

GO:0009835 fruit ripening Biological Process

GO:0010411 xyloglucan metabolic process Biological Process

GO:0042546 cell wall biogenesis Biological Process

GO:0070726 cell wall assembly Biological Process

GO:0071555 cell wall organization Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0048046 apoplast Cellular Component

KEGG gene cross-reference

ath:AT4G25810

ath:AT4G28850

ath:AT5G57550

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.416

Rank 1 · LXL04_019016 · OH-1004

Lysosome / Vacuole0.257

Rank 2 · LXL04_019016 · OH-1004

Cytoplasm0.146

Rank 3 · LXL04_019016 · OH-1004

Endoplasmic reticulum0.117

Rank 4 · LXL04_019016 · OH-1004

Golgi apparatus0.111

Rank 5 · LXL04_019016 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00722.29Glyco_hydro_1629-207 aa

PF06955.20XET_C239-286 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_019016	`PF00722.29`	Glyco_hydro_16	29	207	5.2e-61	205.9
LXL04_019016	`PF06955.20`	XET_C	239	286	8.4e-20	71.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SVV2`	Arabidopsis thaliana	Probable xyloglucan endotransglucosylase/hydrolase protein 26	56.803%	Swiss-Prot	strong database homology
`Q38910`	Arabidopsis thaliana	Probable xyloglucan endotransglucosylase/hydrolase protein 23	54.704%	Swiss-Prot	strong database homology
`Q38907`	Arabidopsis thaliana	Probable xyloglucan endotransglucosylase/hydrolase protein 25	53.025%	Swiss-Prot	strong database homology

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